miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26741 5' -60.4 NC_005808.1 + 36832 0.66 0.38921
Target:  5'- -aCGAUGgucaaGGCccUGGCGcacucgcugcCCGGCGCGCUg -3'
miRNA:   3'- caGCUAC-----UCGc-ACCGU----------GGCCGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 10853 0.66 0.380361
Target:  5'- gGUCGAgcagGcccuGCGUGGCuuCGGUcgGCGCg -3'
miRNA:   3'- -CAGCUa---Cu---CGCACCGugGCCG--CGCGa -5'
26741 5' -60.4 NC_005808.1 + 22473 0.66 0.379483
Target:  5'- -cCGAaG-GCGUGGCAUucgacgaCGGUGUGCUg -3'
miRNA:   3'- caGCUaCuCGCACCGUG-------GCCGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 18839 0.66 0.371646
Target:  5'- -gCGcAUcGGCccgGUGGCGCCGGCaugGCGCUg -3'
miRNA:   3'- caGC-UAcUCG---CACCGUGGCCG---CGCGA- -5'
26741 5' -60.4 NC_005808.1 + 37705 0.66 0.366483
Target:  5'- uGUCGAacaucgaaggacgcaUGAuuGCGUGGCucGCCGGCGaggauuggaaGCUg -3'
miRNA:   3'- -CAGCU---------------ACU--CGCACCG--UGGCCGCg---------CGA- -5'
26741 5' -60.4 NC_005808.1 + 5243 0.66 0.363069
Target:  5'- -aCGGUGuugacguuGGCGuUGGCACCGGCcaccGUGUUg -3'
miRNA:   3'- caGCUAC--------UCGC-ACCGUGGCCG----CGCGA- -5'
26741 5' -60.4 NC_005808.1 + 219 0.66 0.363069
Target:  5'- -gCGAacUG-GCGcaccucGGCAUUGGCGCGCUg -3'
miRNA:   3'- caGCU--ACuCGCa-----CCGUGGCCGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 21101 0.66 0.363069
Target:  5'- cGUCGGUGAGCGcguuuugcuugcUGGUAUCGaCGCuGCc -3'
miRNA:   3'- -CAGCUACUCGC------------ACCGUGGCcGCG-CGa -5'
26741 5' -60.4 NC_005808.1 + 19176 0.66 0.363069
Target:  5'- -cCGGccGGCGUcGCacugACCGGCGCGCUc -3'
miRNA:   3'- caGCUacUCGCAcCG----UGGCCGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 28784 0.66 0.346331
Target:  5'- -cCGccGAGUGgcaggaGGCACaGGCGCGCa -3'
miRNA:   3'- caGCuaCUCGCa-----CCGUGgCCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 14618 0.67 0.338171
Target:  5'- cGUCGGcuuccauGCuuccGGCGCCGGUGCGCa -3'
miRNA:   3'- -CAGCUacu----CGca--CCGUGGCCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 27829 0.67 0.338171
Target:  5'- -gCGcUGcccGCgGUGGCGCCGGCcGCGCc -3'
miRNA:   3'- caGCuACu--CG-CACCGUGGCCG-CGCGa -5'
26741 5' -60.4 NC_005808.1 + 16759 0.67 0.330152
Target:  5'- cUCG-UGGGCGUaGcCACCGGCGaCGUg -3'
miRNA:   3'- cAGCuACUCGCAcC-GUGGCCGC-GCGa -5'
26741 5' -60.4 NC_005808.1 + 34553 0.67 0.322275
Target:  5'- gGUCGAgcagcgguUGAGCGUcgaGGCugucACCGGCGaaGCUg -3'
miRNA:   3'- -CAGCU--------ACUCGCA---CCG----UGGCCGCg-CGA- -5'
26741 5' -60.4 NC_005808.1 + 29017 0.67 0.314538
Target:  5'- --aGGUGAGCGaUGGCGa--GCGCGCg -3'
miRNA:   3'- cagCUACUCGC-ACCGUggcCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 4178 0.67 0.306943
Target:  5'- gGUCGAgguguagccagUGGGCGccgaaaaguUGGaAUCGGCGCGCa -3'
miRNA:   3'- -CAGCU-----------ACUCGC---------ACCgUGGCCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 18450 0.67 0.306943
Target:  5'- cGUCGA--GGCGcUGG-GCCaGGCGCGCa -3'
miRNA:   3'- -CAGCUacUCGC-ACCgUGG-CCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 11411 0.68 0.292175
Target:  5'- gGUCu-UGAGCaGcGGCgaGCCGGCGUGCa -3'
miRNA:   3'- -CAGcuACUCG-CaCCG--UGGCCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 38085 0.68 0.292175
Target:  5'- -gCGAUGcGCucaagcgccuGUGGCGCCG-CGCGCa -3'
miRNA:   3'- caGCUACuCG----------CACCGUGGCcGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 13232 0.68 0.285002
Target:  5'- -cCGAgggcugGGGCaaGGcCACCGGCGCGUg -3'
miRNA:   3'- caGCUa-----CUCGcaCC-GUGGCCGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.