Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26758 | 5' | -59.5 | NC_005808.1 | + | 16965 | 0.66 | 0.436132 |
Target: 5'- cUGCCGAGGuGGacGCGCUgcugGCGaCCGCg -3' miRNA: 3'- uGCGGUUCCuUCa-CGCGG----UGCgGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 18561 | 0.66 | 0.436132 |
Target: 5'- cACGUCGGuGGAG----GCCGCGCUCGCg -3' miRNA: 3'- -UGCGGUU-CCUUcacgCGGUGCGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 349 | 0.66 | 0.436132 |
Target: 5'- cGCGCagcAGGccGUcCGCCAgGCCCGa -3' miRNA: 3'- -UGCGgu-UCCuuCAcGCGGUgCGGGCg -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 35424 | 0.66 | 0.426594 |
Target: 5'- uGCGUCAGGGcgucAGcGCGUCGgGCCUGg -3' miRNA: 3'- -UGCGGUUCCu---UCaCGCGGUgCGGGCg -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 15089 | 0.66 | 0.41718 |
Target: 5'- cGCGCCGA-GAAGcugGCgGCCGaggcCGCCgGCa -3' miRNA: 3'- -UGCGGUUcCUUCa--CG-CGGU----GCGGgCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 25296 | 0.66 | 0.41718 |
Target: 5'- uAUGCCGgaauGGAuGcGCGCCcgcgGCGCCgGCu -3' miRNA: 3'- -UGCGGUu---CCUuCaCGCGG----UGCGGgCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 39023 | 0.66 | 0.41718 |
Target: 5'- -gGCCGcGGAucGGUGUacGCC-CaGCCCGCu -3' miRNA: 3'- ugCGGUuCCU--UCACG--CGGuG-CGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 13726 | 0.66 | 0.41718 |
Target: 5'- uACGCCAgcagcgAGGAcGUgGCGCgGCGCUgGg -3' miRNA: 3'- -UGCGGU------UCCUuCA-CGCGgUGCGGgCg -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 22480 | 0.66 | 0.407895 |
Target: 5'- gGCGgaaCCAGGGgcGggcuggGCugGUCAUGCCCGCc -3' miRNA: 3'- -UGC---GGUUCCuuCa-----CG--CGGUGCGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 32153 | 0.66 | 0.398739 |
Target: 5'- gACGCCAAGG----GCGCCAuUGCCaaGCu -3' miRNA: 3'- -UGCGGUUCCuucaCGCGGU-GCGGg-CG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 34952 | 0.66 | 0.398739 |
Target: 5'- uACGgCAAGGAGccggcGUGggucgaGCCGCGCCCc- -3' miRNA: 3'- -UGCgGUUCCUU-----CACg-----CGGUGCGGGcg -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 17268 | 0.66 | 0.39331 |
Target: 5'- -aGCCGGGGAuauugccguccacgaAGccgGCGCCGCggGCgCGCa -3' miRNA: 3'- ugCGGUUCCU---------------UCa--CGCGGUG--CGgGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 17448 | 0.66 | 0.389717 |
Target: 5'- cCGCCAGcaucGAGGccagGUGCCACGCCaggGCc -3' miRNA: 3'- uGCGGUUc---CUUCa---CGCGGUGCGGg--CG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 14399 | 0.66 | 0.389717 |
Target: 5'- -gGCCGAccuGGAcaAG-GCGCCGCaCCUGCu -3' miRNA: 3'- ugCGGUU---CCU--UCaCGCGGUGcGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 24492 | 0.66 | 0.389717 |
Target: 5'- nCGCC-AGGAAGUcguaggggcugGCGCCcACGCCg-- -3' miRNA: 3'- uGCGGuUCCUUCA-----------CGCGG-UGCGGgcg -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 6295 | 0.66 | 0.389717 |
Target: 5'- gGCGCCGGGGcuuaucuccGGUGCGUgcaagacgcggCGCGuUCCGCc -3' miRNA: 3'- -UGCGGUUCCu--------UCACGCG-----------GUGC-GGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 13189 | 0.66 | 0.389717 |
Target: 5'- gGCGCCcuuGGccG-GCGUugUACGCCUGCa -3' miRNA: 3'- -UGCGGuu-CCuuCaCGCG--GUGCGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 18854 | 0.66 | 0.389717 |
Target: 5'- gGCGCCGgcauGGcgcugcuGcGCGCCACcgaggcacugGCCCGCg -3' miRNA: 3'- -UGCGGUu---CCuu-----CaCGCGGUG----------CGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 25291 | 0.67 | 0.380829 |
Target: 5'- aAUGCCuuGAGGucGUGCgGCCG-GCCCuGCc -3' miRNA: 3'- -UGCGG--UUCCuuCACG-CGGUgCGGG-CG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 38203 | 0.67 | 0.380829 |
Target: 5'- cACGCuCAAGGcccGGcgcgacgGCGCCugGCUgCGCa -3' miRNA: 3'- -UGCG-GUUCCu--UCa------CGCGGugCGG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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