miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 5' -59.5 NC_005808.1 + 349 0.66 0.436132
Target:  5'- cGCGCagcAGGccGUcCGCCAgGCCCGa -3'
miRNA:   3'- -UGCGgu-UCCuuCAcGCGGUgCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 18561 0.66 0.436132
Target:  5'- cACGUCGGuGGAG----GCCGCGCUCGCg -3'
miRNA:   3'- -UGCGGUU-CCUUcacgCGGUGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 16965 0.66 0.436132
Target:  5'- cUGCCGAGGuGGacGCGCUgcugGCGaCCGCg -3'
miRNA:   3'- uGCGGUUCCuUCa-CGCGG----UGCgGGCG- -5'
26758 5' -59.5 NC_005808.1 + 35424 0.66 0.426594
Target:  5'- uGCGUCAGGGcgucAGcGCGUCGgGCCUGg -3'
miRNA:   3'- -UGCGGUUCCu---UCaCGCGGUgCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 15089 0.66 0.41718
Target:  5'- cGCGCCGA-GAAGcugGCgGCCGaggcCGCCgGCa -3'
miRNA:   3'- -UGCGGUUcCUUCa--CG-CGGU----GCGGgCG- -5'
26758 5' -59.5 NC_005808.1 + 13726 0.66 0.41718
Target:  5'- uACGCCAgcagcgAGGAcGUgGCGCgGCGCUgGg -3'
miRNA:   3'- -UGCGGU------UCCUuCA-CGCGgUGCGGgCg -5'
26758 5' -59.5 NC_005808.1 + 39023 0.66 0.41718
Target:  5'- -gGCCGcGGAucGGUGUacGCC-CaGCCCGCu -3'
miRNA:   3'- ugCGGUuCCU--UCACG--CGGuG-CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 25296 0.66 0.41718
Target:  5'- uAUGCCGgaauGGAuGcGCGCCcgcgGCGCCgGCu -3'
miRNA:   3'- -UGCGGUu---CCUuCaCGCGG----UGCGGgCG- -5'
26758 5' -59.5 NC_005808.1 + 22480 0.66 0.407895
Target:  5'- gGCGgaaCCAGGGgcGggcuggGCugGUCAUGCCCGCc -3'
miRNA:   3'- -UGC---GGUUCCuuCa-----CG--CGGUGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 32153 0.66 0.398739
Target:  5'- gACGCCAAGG----GCGCCAuUGCCaaGCu -3'
miRNA:   3'- -UGCGGUUCCuucaCGCGGU-GCGGg-CG- -5'
26758 5' -59.5 NC_005808.1 + 34952 0.66 0.398739
Target:  5'- uACGgCAAGGAGccggcGUGggucgaGCCGCGCCCc- -3'
miRNA:   3'- -UGCgGUUCCUU-----CACg-----CGGUGCGGGcg -5'
26758 5' -59.5 NC_005808.1 + 17268 0.66 0.39331
Target:  5'- -aGCCGGGGAuauugccguccacgaAGccgGCGCCGCggGCgCGCa -3'
miRNA:   3'- ugCGGUUCCU---------------UCa--CGCGGUG--CGgGCG- -5'
26758 5' -59.5 NC_005808.1 + 14399 0.66 0.389717
Target:  5'- -gGCCGAccuGGAcaAG-GCGCCGCaCCUGCu -3'
miRNA:   3'- ugCGGUU---CCU--UCaCGCGGUGcGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 24492 0.66 0.389717
Target:  5'- nCGCC-AGGAAGUcguaggggcugGCGCCcACGCCg-- -3'
miRNA:   3'- uGCGGuUCCUUCA-----------CGCGG-UGCGGgcg -5'
26758 5' -59.5 NC_005808.1 + 17448 0.66 0.389717
Target:  5'- cCGCCAGcaucGAGGccagGUGCCACGCCaggGCc -3'
miRNA:   3'- uGCGGUUc---CUUCa---CGCGGUGCGGg--CG- -5'
26758 5' -59.5 NC_005808.1 + 13189 0.66 0.389717
Target:  5'- gGCGCCcuuGGccG-GCGUugUACGCCUGCa -3'
miRNA:   3'- -UGCGGuu-CCuuCaCGCG--GUGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 18854 0.66 0.389717
Target:  5'- gGCGCCGgcauGGcgcugcuGcGCGCCACcgaggcacugGCCCGCg -3'
miRNA:   3'- -UGCGGUu---CCuu-----CaCGCGGUG----------CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 6295 0.66 0.389717
Target:  5'- gGCGCCGGGGcuuaucuccGGUGCGUgcaagacgcggCGCGuUCCGCc -3'
miRNA:   3'- -UGCGGUUCCu--------UCACGCG-----------GUGC-GGGCG- -5'
26758 5' -59.5 NC_005808.1 + 25291 0.67 0.380829
Target:  5'- aAUGCCuuGAGGucGUGCgGCCG-GCCCuGCc -3'
miRNA:   3'- -UGCGG--UUCCuuCACG-CGGUgCGGG-CG- -5'
26758 5' -59.5 NC_005808.1 + 38203 0.67 0.380829
Target:  5'- cACGCuCAAGGcccGGcgcgacgGCGCCugGCUgCGCa -3'
miRNA:   3'- -UGCG-GUUCCu--UCa------CGCGGugCGG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.