miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26760 3' -54.4 NC_005808.1 + 20212 0.66 0.7197
Target:  5'- uUGGCA---GCGCCcGCGGCCgGCUGu -3'
miRNA:   3'- cGCUGUaacUGCGGcUGCUGGaCGAC- -5'
26760 3' -54.4 NC_005808.1 + 19325 0.66 0.719699
Target:  5'- cGUGGCGc--ACGCCGACaccgaccuGACCaUGCUGu -3'
miRNA:   3'- -CGCUGUaacUGCGGCUG--------CUGG-ACGAC- -5'
26760 3' -54.4 NC_005808.1 + 13831 0.66 0.719699
Target:  5'- cGCGACGccgUGcGCGCCGagaaGCGcACCgcGCUGg -3'
miRNA:   3'- -CGCUGUa--AC-UGCGGC----UGC-UGGa-CGAC- -5'
26760 3' -54.4 NC_005808.1 + 8785 0.66 0.718612
Target:  5'- cGCGGCGcacgaUGggucggccGCGCCGGucaguacCGAUCUGCUGg -3'
miRNA:   3'- -CGCUGUa----AC--------UGCGGCU-------GCUGGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 15146 0.66 0.697789
Target:  5'- gGCGGCGgauGCGCCcagGGCGACg-GCUGa -3'
miRNA:   3'- -CGCUGUaacUGCGG---CUGCUGgaCGAC- -5'
26760 3' -54.4 NC_005808.1 + 14752 0.66 0.697789
Target:  5'- cGCGcaGCAUUGGCGCgcagcgugucggUGuCGAUCUGCUu -3'
miRNA:   3'- -CGC--UGUAACUGCG------------GCuGCUGGACGAc -5'
26760 3' -54.4 NC_005808.1 + 18456 0.66 0.686729
Target:  5'- cGUGACGgucgcGGCGCCGGCGGCgucgGCc- -3'
miRNA:   3'- -CGCUGUaa---CUGCGGCUGCUGga--CGac -5'
26760 3' -54.4 NC_005808.1 + 2196 0.66 0.686729
Target:  5'- cCGAUAggGAUGCCGACGcCCUcGUc- -3'
miRNA:   3'- cGCUGUaaCUGCGGCUGCuGGA-CGac -5'
26760 3' -54.4 NC_005808.1 + 5255 0.66 0.686729
Target:  5'- uUGGCGUUGGCaCCGGCcACCgUGUUGa -3'
miRNA:   3'- cGCUGUAACUGcGGCUGcUGG-ACGAC- -5'
26760 3' -54.4 NC_005808.1 + 5119 0.66 0.686728
Target:  5'- uGCGGC--UGGCGCCGuuGAaCUGCa- -3'
miRNA:   3'- -CGCUGuaACUGCGGCugCUgGACGac -5'
26760 3' -54.4 NC_005808.1 + 19384 0.66 0.680065
Target:  5'- cCGAgGccGAgGCCGAauucaccgacgaggcCGACCUGCUGc -3'
miRNA:   3'- cGCUgUaaCUgCGGCU---------------GCUGGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 15401 0.66 0.675614
Target:  5'- cCGGCGaaGAUGCCgGACGACCgaUGCa- -3'
miRNA:   3'- cGCUGUaaCUGCGG-CUGCUGG--ACGac -5'
26760 3' -54.4 NC_005808.1 + 10049 0.66 0.675614
Target:  5'- aGCGGCAU---CGCCGGCGGCa-GCa- -3'
miRNA:   3'- -CGCUGUAacuGCGGCUGCUGgaCGac -5'
26760 3' -54.4 NC_005808.1 + 38169 0.66 0.675614
Target:  5'- gGCGGCuucccccUGGCGCgGcACGAUCUGgUGa -3'
miRNA:   3'- -CGCUGua-----ACUGCGgC-UGCUGGACgAC- -5'
26760 3' -54.4 NC_005808.1 + 17372 0.67 0.664456
Target:  5'- uGCGACAgguaUGccugcaucGCGCCGACGcACC-GCUu -3'
miRNA:   3'- -CGCUGUa---AC--------UGCGGCUGC-UGGaCGAc -5'
26760 3' -54.4 NC_005808.1 + 28382 0.67 0.664456
Target:  5'- gGCGAgGUguuccaguucGACGCCGGCGGCgCgGCg- -3'
miRNA:   3'- -CGCUgUAa---------CUGCGGCUGCUG-GaCGac -5'
26760 3' -54.4 NC_005808.1 + 28072 0.67 0.664456
Target:  5'- -------cGGCGCCGGCGACgUGgCUGa -3'
miRNA:   3'- cgcuguaaCUGCGGCUGCUGgAC-GAC- -5'
26760 3' -54.4 NC_005808.1 + 33954 0.67 0.664456
Target:  5'- cGCG-CGaUGAagGCCGGCGACCUcGCc- -3'
miRNA:   3'- -CGCuGUaACUg-CGGCUGCUGGA-CGac -5'
26760 3' -54.4 NC_005808.1 + 12022 0.67 0.653268
Target:  5'- cGCGGCc--GugGCCGGCGAgguCUUGCc- -3'
miRNA:   3'- -CGCUGuaaCugCGGCUGCU---GGACGac -5'
26760 3' -54.4 NC_005808.1 + 21177 0.67 0.653268
Target:  5'- cGCGGCc----UGCUGcGCGGCCUGCUGc -3'
miRNA:   3'- -CGCUGuaacuGCGGC-UGCUGGACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.