miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 379 0.72 0.391879
Target:  5'- uGGCcuGCCGAuuGAGcgcGGCCaGCGCGCgACu -3'
miRNA:   3'- -UCG--UGGCUuuUUU---UCGG-CGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 18853 0.81 0.102955
Target:  5'- uGGCGCCGGcauggcgcuGCUGCGCGCCACc -3'
miRNA:   3'- -UCGUGGCUuuuuuu---CGGCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 35518 0.76 0.221057
Target:  5'- cGCGCCGugGGuAGGCCGCGgCGUCAUg -3'
miRNA:   3'- uCGUGGCuuUUuUUCGGCGC-GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 13894 0.72 0.358777
Target:  5'- uGCGCCGAcagcaucgaccuuguGAAcGAcGUgGCGCGCCGCg -3'
miRNA:   3'- uCGUGGCU---------------UUUuUU-CGgCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 11884 0.72 0.373245
Target:  5'- cGCAuuCCGAugGAGAAAGCCauGCcCGCCACa -3'
miRNA:   3'- uCGU--GGCU--UUUUUUCGG--CGcGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 37710 0.76 0.221057
Target:  5'- --gGCCGAAAAcGAGGCCGcCGuCGCCGCg -3'
miRNA:   3'- ucgUGGCUUUU-UUUCGGC-GC-GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 20492 0.74 0.302538
Target:  5'- cGCGCUGGAAcaguggguuacGGucauucacgccaucGAGCCGCGCGCCGa -3'
miRNA:   3'- uCGUGGCUUU-----------UU--------------UUCGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 16444 0.73 0.329354
Target:  5'- cGCAUCGcAGAcggcGAGCCGCuGCGCCAa -3'
miRNA:   3'- uCGUGGCuUUUu---UUCGGCG-CGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 10861 0.72 0.382487
Target:  5'- cAGCGCauauuuuuaggCGuGAAAAAGcCCGCGCGCgGCg -3'
miRNA:   3'- -UCGUG-----------GCuUUUUUUC-GGCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 25197 0.71 0.401421
Target:  5'- gGGCGCCGcuGAaucGAAGCgGUGCGUCGg -3'
miRNA:   3'- -UCGUGGCuuUU---UUUCGgCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 28271 0.66 0.741856
Target:  5'- aGGC-CCGgcAGuucagccAAGgCGCGCGCCAg -3'
miRNA:   3'- -UCGuGGCuuUUu------UUCgGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 27979 0.75 0.260241
Target:  5'- cGGCGCCGGAAGcaugGAAGCCGaCGCaCUGCu -3'
miRNA:   3'- -UCGUGGCUUUU----UUUCGGC-GCGcGGUG- -5'
26778 3' -53.2 NC_005808.1 + 18159 0.75 0.246585
Target:  5'- uGuCGCCGA-----GGCCGCGCGCgGCa -3'
miRNA:   3'- uC-GUGGCUuuuuuUCGGCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 32721 0.72 0.373245
Target:  5'- cGCGCCuGGccGAGAAGCaGCGCGCCGg -3'
miRNA:   3'- uCGUGGcUU--UUUUUCGgCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 15089 0.72 0.382487
Target:  5'- cGCGCCGAGAAgcuggcggccGAGGCCGC-CGgCAUc -3'
miRNA:   3'- uCGUGGCUUUU----------UUUCGGCGcGCgGUG- -5'
26778 3' -53.2 NC_005808.1 + 40246 0.75 0.260241
Target:  5'- uGCagGCCGAAuuGcGGCgcaCGCGCGCCACg -3'
miRNA:   3'- uCG--UGGCUUuuUuUCG---GCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 35088 0.72 0.391879
Target:  5'- cGGaCGCCGA----AAG-CGCGCGCCGCc -3'
miRNA:   3'- -UC-GUGGCUuuuuUUCgGCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 38858 0.71 0.408187
Target:  5'- cGGCACCGAcguGcccaccaccggcguGAAcGGCaCGgGCGCCACg -3'
miRNA:   3'- -UCGUGGCU---U--------------UUUuUCG-GCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 11355 0.73 0.321047
Target:  5'- cGC-CCGGcucguAGcuGGGCCGCGCGCCGg -3'
miRNA:   3'- uCGuGGCU-----UUuuUUCGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 28381 0.72 0.373245
Target:  5'- cGCGCC--AAGGAAGCCGCgcuGCGCCu- -3'
miRNA:   3'- uCGUGGcuUUUUUUCGGCG---CGCGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.