miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 18853 0.81 0.102955
Target:  5'- uGGCGCCGGcauggcgcuGCUGCGCGCCACc -3'
miRNA:   3'- -UCGUGGCUuuuuuu---CGGCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 26325 0.7 0.504315
Target:  5'- uAGCcuuCCGGGu---GGCCGCGCGCgAg -3'
miRNA:   3'- -UCGu--GGCUUuuuuUCGGCGCGCGgUg -5'
26778 3' -53.2 NC_005808.1 + 42358 0.7 0.482749
Target:  5'- -cCACCGggGAAAc-CCaGCGCGCCAa -3'
miRNA:   3'- ucGUGGCuuUUUUucGG-CGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 5125 0.71 0.420941
Target:  5'- uGGCGCCGuuGAAcuGCaaCGUGCCGCg -3'
miRNA:   3'- -UCGUGGCuuUUUuuCGgcGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 32721 0.72 0.373245
Target:  5'- cGCGCCuGGccGAGAAGCaGCGCGCCGg -3'
miRNA:   3'- uCGUGGcUU--UUUUUCGgCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 20603 0.69 0.537409
Target:  5'- aGGCGCCGAcGAAAc-CCGCaCGCUGCg -3'
miRNA:   3'- -UCGUGGCUuUUUUucGGCGcGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 17856 0.69 0.515254
Target:  5'- cAGCAUgGGuc-GAGGCCGCGCaGgCGCg -3'
miRNA:   3'- -UCGUGgCUuuuUUUCGGCGCG-CgGUG- -5'
26778 3' -53.2 NC_005808.1 + 16444 0.73 0.329354
Target:  5'- cGCAUCGcAGAcggcGAGCCGCuGCGCCAa -3'
miRNA:   3'- uCGUGGCuUUUu---UUCGGCG-CGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 14792 0.7 0.461638
Target:  5'- cGCGCgCGAGGAcgugcugcGGCUGCGCGgCGCg -3'
miRNA:   3'- uCGUG-GCUUUUuu------UCGGCGCGCgGUG- -5'
26778 3' -53.2 NC_005808.1 + 27839 0.71 0.451266
Target:  5'- cGaCACCGAcac---GCUGCGCGCCAa -3'
miRNA:   3'- uC-GUGGCUuuuuuuCGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 20492 0.74 0.302538
Target:  5'- cGCGCUGGAAcaguggguuacGGucauucacgccaucGAGCCGCGCGCCGa -3'
miRNA:   3'- uCGUGGCUUU-----------UU--------------UUCGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 40246 0.75 0.260241
Target:  5'- uGCagGCCGAAuuGcGGCgcaCGCGCGCCACg -3'
miRNA:   3'- uCG--UGGCUUuuUuUCG---GCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 14759 0.69 0.54861
Target:  5'- gAGCAgCGGcgc--GGCCG-GCGCCACc -3'
miRNA:   3'- -UCGUgGCUuuuuuUCGGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 31505 0.69 0.537409
Target:  5'- cGCAgCCGAcAAGGuGCuCGCGCGCgACc -3'
miRNA:   3'- uCGU-GGCUuUUUUuCG-GCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 13119 0.7 0.482749
Target:  5'- --gACCGAcgcgGAAcuGGCCGCGCGCUuCg -3'
miRNA:   3'- ucgUGGCU----UUUuuUCGGCGCGCGGuG- -5'
26778 3' -53.2 NC_005808.1 + 379 0.72 0.391879
Target:  5'- uGGCcuGCCGAuuGAGcgcGGCCaGCGCGCgACu -3'
miRNA:   3'- -UCG--UGGCUuuUUU---UCGG-CGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 15089 0.72 0.382487
Target:  5'- cGCGCCGAGAAgcuggcggccGAGGCCGC-CGgCAUc -3'
miRNA:   3'- uCGUGGCUUUU----------UUUCGGCGcGCgGUG- -5'
26778 3' -53.2 NC_005808.1 + 27979 0.75 0.260241
Target:  5'- cGGCGCCGGAAGcaugGAAGCCGaCGCaCUGCu -3'
miRNA:   3'- -UCGUGGCUUUU----UUUCGGC-GCGcGGUG- -5'
26778 3' -53.2 NC_005808.1 + 18371 0.71 0.441023
Target:  5'- -uCAUCGAGAAGAucGGCCGCuCGCCGg -3'
miRNA:   3'- ucGUGGCUUUUUU--UCGGCGcGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 19078 0.7 0.461638
Target:  5'- uGCGCCGccuGGAAGgCGCGCucgcggaacuGCCGCa -3'
miRNA:   3'- uCGUGGCuuuUUUUCgGCGCG----------CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.