miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 26336 0.74 0.304905
Target:  5'- cGCACCGcGAAcuGGCCGCGcCGCUc- -3'
miRNA:   3'- uCGUGGCuUUUuuUCGGCGC-GCGGug -5'
26778 3' -53.2 NC_005808.1 + 27680 0.73 0.312897
Target:  5'- -cCACCGuggucuuGGAAuacAGGCCGCGCGCCGg -3'
miRNA:   3'- ucGUGGCu------UUUU---UUCGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 16943 0.73 0.321047
Target:  5'- cGGCGCCGucc---AGCaGCGUGCCGCg -3'
miRNA:   3'- -UCGUGGCuuuuuuUCGgCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 19876 0.73 0.321047
Target:  5'- cGUGCCGAAGGc--GUCGCGCGCCu- -3'
miRNA:   3'- uCGUGGCUUUUuuuCGGCGCGCGGug -5'
26778 3' -53.2 NC_005808.1 + 23763 0.73 0.346442
Target:  5'- cGGCGCCacc---GGGCCGaUGCGCCGCg -3'
miRNA:   3'- -UCGUGGcuuuuuUUCGGC-GCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 36384 0.72 0.355221
Target:  5'- aAGaccaCGAccAGGAGCCGCGCGCCGu -3'
miRNA:   3'- -UCgug-GCUuuUUUUCGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 27785 0.72 0.355221
Target:  5'- cGUACaCGAAGcgcgcGCCGCGCaGCCGCa -3'
miRNA:   3'- uCGUG-GCUUUuuuu-CGGCGCG-CGGUG- -5'
26778 3' -53.2 NC_005808.1 + 13289 0.72 0.364156
Target:  5'- cAGCGCCGAuu----GCaGCGCGCCGg -3'
miRNA:   3'- -UCGUGGCUuuuuuuCGgCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 24425 0.72 0.367773
Target:  5'- cGGC-CCGAuuugucgguGCCGCGCGCgGCc -3'
miRNA:   3'- -UCGuGGCUuuuuuu---CGGCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 32871 0.72 0.373245
Target:  5'- cGGCGCCGAGAuu--GUCGCGC-CCGa -3'
miRNA:   3'- -UCGUGGCUUUuuuuCGGCGCGcGGUg -5'
26778 3' -53.2 NC_005808.1 + 16061 0.71 0.401421
Target:  5'- cGCGCaCGu--GGccGCCGCGCGCgGCg -3'
miRNA:   3'- uCGUG-GCuuuUUuuCGGCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 29089 0.71 0.411109
Target:  5'- gGGCGCCGAGGucAGGCC-CGUGCgGg -3'
miRNA:   3'- -UCGUGGCUUUuuUUCGGcGCGCGgUg -5'
26778 3' -53.2 NC_005808.1 + 16584 0.71 0.415025
Target:  5'- cGCGCCGGAc-GAGGCCGaCcacgcgaugguguugGCGCCGCc -3'
miRNA:   3'- uCGUGGCUUuuUUUCGGC-G---------------CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 38896 0.71 0.420941
Target:  5'- uGCGCCGcau-GGGGCaGCGCGUCGCc -3'
miRNA:   3'- uCGUGGCuuuuUUUCGgCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 41004 0.71 0.420941
Target:  5'- cGCACuCGAccaccAGGAAGGCgGCG-GCCACu -3'
miRNA:   3'- uCGUG-GCU-----UUUUUUCGgCGCgCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 22593 0.71 0.430913
Target:  5'- cGGUugCGAucuugcacGAAGAAGCgcccCGCGCGCgGCa -3'
miRNA:   3'- -UCGugGCU--------UUUUUUCG----GCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 14386 0.71 0.440006
Target:  5'- cGCGCCGcgGAacguaggcguagcGAAGCUGgGCGUCGCc -3'
miRNA:   3'- uCGUGGCuuUU-------------UUUCGGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 28666 0.71 0.451266
Target:  5'- cGGUGCCGGc----GGCCucgccagcgcgGCGCGCCACg -3'
miRNA:   3'- -UCGUGGCUuuuuuUCGG-----------CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 4196 0.71 0.451266
Target:  5'- gGGCGCCGAAAAGuuggaaucGGCgCGCaccGUGCCAUc -3'
miRNA:   3'- -UCGUGGCUUUUUu-------UCG-GCG---CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 30064 0.7 0.472134
Target:  5'- uGGUGCCGGAAAuauccuuugugcGgcGcCCGgGCGCCACg -3'
miRNA:   3'- -UCGUGGCUUUU------------UuuC-GGCgCGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.