miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26779 3' -62.3 NC_005808.1 + 3925 0.66 0.283446
Target:  5'- gGGGAcgcGCUGCCGUCcGCGAUGgucaCGUUg -3'
miRNA:   3'- -UCCUa--CGACGGCGGcCGCUACg---GCGA- -5'
26779 3' -62.3 NC_005808.1 + 17065 0.66 0.283446
Target:  5'- cGGggGC-GCUGCCGGCG--GCgGCa -3'
miRNA:   3'- uCCuaCGaCGGCGGCCGCuaCGgCGa -5'
26779 3' -62.3 NC_005808.1 + 5096 0.66 0.282043
Target:  5'- cAGGcgGCcggcccagcguccggUGCgGCUGGCGccguugaacugcaacGUGCCGCg -3'
miRNA:   3'- -UCCuaCG---------------ACGgCGGCCGC---------------UACGGCGa -5'
26779 3' -62.3 NC_005808.1 + 4378 0.66 0.276487
Target:  5'- cGGAUGC-GCaGCCaGGCGccGUCGCg -3'
miRNA:   3'- uCCUACGaCGgCGG-CCGCuaCGGCGa -5'
26779 3' -62.3 NC_005808.1 + 14819 0.66 0.276487
Target:  5'- cGGcGgcGCUGCCuucGCCcaGGuCGAUGCCGUUg -3'
miRNA:   3'- -UC-CuaCGACGG---CGG--CC-GCUACGGCGA- -5'
26779 3' -62.3 NC_005808.1 + 18938 0.66 0.274425
Target:  5'- gAGGGucgccuggugcaguUGCUGCCGCCGcCGGcuaCCGCg -3'
miRNA:   3'- -UCCU--------------ACGACGGCGGCcGCUac-GGCGa -5'
26779 3' -62.3 NC_005808.1 + 15102 0.66 0.269664
Target:  5'- uGGcgGCcgagGCCGCCGGCauccucgcguGGUGCgUGCg -3'
miRNA:   3'- uCCuaCGa---CGGCGGCCG----------CUACG-GCGa -5'
26779 3' -62.3 NC_005808.1 + 3330 0.66 0.269664
Target:  5'- uAGG-UGCUGUCGCUGGUGGaaUGCgucaCGCc -3'
miRNA:   3'- -UCCuACGACGGCGGCCGCU--ACG----GCGa -5'
26779 3' -62.3 NC_005808.1 + 18351 0.66 0.269664
Target:  5'- aGGGAUGaccaccuguUUGCCGgCGGCGAgguuggccuUGCCGa- -3'
miRNA:   3'- -UCCUAC---------GACGGCgGCCGCU---------ACGGCga -5'
26779 3' -62.3 NC_005808.1 + 14898 0.66 0.267644
Target:  5'- cAGGGucugcgcggcgaucUGCUGCUgGCCGGCcucaaGUGCCGaCUg -3'
miRNA:   3'- -UCCU--------------ACGACGG-CGGCCGc----UACGGC-GA- -5'
26779 3' -62.3 NC_005808.1 + 8679 0.66 0.262978
Target:  5'- cGGcUGCUgcGCCGCCcaGGUGugcGCCGCg -3'
miRNA:   3'- uCCuACGA--CGGCGG--CCGCua-CGGCGa -5'
26779 3' -62.3 NC_005808.1 + 1848 0.66 0.262316
Target:  5'- cAGGAUGUUGCCGCCGucuugcagguucaGCccgugGCCGg- -3'
miRNA:   3'- -UCCUACGACGGCGGC-------------CGcua--CGGCga -5'
26779 3' -62.3 NC_005808.1 + 8975 0.67 0.256427
Target:  5'- cGGAUucGCagcgguggccgUGCCGCCaGCGGUGgCCGUg -3'
miRNA:   3'- uCCUA--CG-----------ACGGCGGcCGCUAC-GGCGa -5'
26779 3' -62.3 NC_005808.1 + 36676 0.67 0.256427
Target:  5'- uGGGAUGCcGCCaG-CGGCGAaaagaUGCCGg- -3'
miRNA:   3'- -UCCUACGaCGG-CgGCCGCU-----ACGGCga -5'
26779 3' -62.3 NC_005808.1 + 19042 0.67 0.256427
Target:  5'- uGGuaGCgGCCGCCGGCGgcGUCGa- -3'
miRNA:   3'- uCCuaCGaCGGCGGCCGCuaCGGCga -5'
26779 3' -62.3 NC_005808.1 + 8512 0.67 0.256427
Target:  5'- -cGAUGCccuugaUGUCGCCGGCGAacuUGCC-Ca -3'
miRNA:   3'- ucCUACG------ACGGCGGCCGCU---ACGGcGa -5'
26779 3' -62.3 NC_005808.1 + 4816 0.67 0.256427
Target:  5'- cGGGAuUGCUG--GCCGGCGAcagGUCGCc -3'
miRNA:   3'- -UCCU-ACGACggCGGCCGCUa--CGGCGa -5'
26779 3' -62.3 NC_005808.1 + 30554 0.67 0.25001
Target:  5'- cGGGucuuuGUGCcgGCCGCUGuaGAUGCgGCa -3'
miRNA:   3'- -UCC-----UACGa-CGGCGGCcgCUACGgCGa -5'
26779 3' -62.3 NC_005808.1 + 26164 0.67 0.243726
Target:  5'- --cGUGUUcaacGCCGCCGGCGAUuaccccgcgGCCGUg -3'
miRNA:   3'- uccUACGA----CGGCGGCCGCUA---------CGGCGa -5'
26779 3' -62.3 NC_005808.1 + 33265 0.67 0.237575
Target:  5'- aAGGAUGCcGCCGCCcgccGCGccgacgugcGCCGCc -3'
miRNA:   3'- -UCCUACGaCGGCGGc---CGCua-------CGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.