miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
268 5' -52.6 AC_000008.1 + 29397 0.66 0.733445
Target:  5'- aAGGGCGGCcgccucugcuggaccAACgAGCGCCuacgcggaGAGGUaGCCa -3'
miRNA:   3'- -UCUCGUUG---------------UUG-UCGCGG--------UUCCGaUGG- -5'
268 5' -52.6 AC_000008.1 + 19671 0.66 0.733445
Target:  5'- cAGGGCcgccgccgcgcguugGGCGGCAGUGCCGGgucGGCgGCg -3'
miRNA:   3'- -UCUCG---------------UUGUUGUCGCGGUU---CCGaUGg -5'
268 5' -52.6 AC_000008.1 + 856 0.66 0.728952
Target:  5'- cGAGCAGCcggAGCAGagaGCCuuGGGUccgguuucuaUGCCa -3'
miRNA:   3'- uCUCGUUG---UUGUCg--CGGu-UCCG----------AUGG- -5'
268 5' -52.6 AC_000008.1 + 18282 0.66 0.728952
Target:  5'- uGGGGUggUAgcgcgcuguugGCAGCaCCAGGGUccUGCCu -3'
miRNA:   3'- -UCUCGuuGU-----------UGUCGcGGUUCCG--AUGG- -5'
268 5' -52.6 AC_000008.1 + 22886 0.66 0.717645
Target:  5'- uAGcAGCAGCAACAgGCGCgAguuGGGCgucaGCa -3'
miRNA:   3'- -UC-UCGUUGUUGU-CGCGgU---UCCGa---UGg -5'
268 5' -52.6 AC_000008.1 + 12441 0.66 0.706242
Target:  5'- cGGcAGCAGCcGCAG-GCCAAccGGCUcuCCg -3'
miRNA:   3'- -UC-UCGUUGuUGUCgCGGUU--CCGAu-GG- -5'
268 5' -52.6 AC_000008.1 + 16330 0.66 0.706242
Target:  5'- cGAGCGgccgccGCAGCAGCcgcgGCCAuuAGuGCUAUg -3'
miRNA:   3'- uCUCGU------UGUUGUCG----CGGU--UC-CGAUGg -5'
268 5' -52.6 AC_000008.1 + 23170 0.66 0.706242
Target:  5'- uAGuGCAACcAUGGaGCCcAGGUUGCCc -3'
miRNA:   3'- -UCuCGUUGuUGUCgCGGuUCCGAUGG- -5'
268 5' -52.6 AC_000008.1 + 6832 0.66 0.706242
Target:  5'- gGGAGCGAgGAgguCGG-GaCCGAGGUUGCUa -3'
miRNA:   3'- -UCUCGUUgUU---GUCgC-GGUUCCGAUGG- -5'
268 5' -52.6 AC_000008.1 + 20356 0.66 0.694757
Target:  5'- cGGGCAACAGCucGGCGCCcaccaccggAAaGUUGCUg -3'
miRNA:   3'- uCUCGUUGUUG--UCGCGG---------UUcCGAUGG- -5'
268 5' -52.6 AC_000008.1 + 2656 0.66 0.690143
Target:  5'- cGGAGCGGCGGCGGCaGCaguuuauucgcGcGCUGCUg -3'
miRNA:   3'- -UCUCGUUGUUGUCG-CGguu--------C-CGAUGG- -5'
268 5' -52.6 AC_000008.1 + 25102 0.66 0.683204
Target:  5'- uAGcGCAGCAGCcgccGCGCCuggAAGGaaGCCa -3'
miRNA:   3'- -UCuCGUUGUUGu---CGCGG---UUCCgaUGG- -5'
268 5' -52.6 AC_000008.1 + 19847 0.66 0.683204
Target:  5'- cGGGUAAUAugGGUGUUcuGGCggGCCa -3'
miRNA:   3'- uCUCGUUGUugUCGCGGuuCCGa-UGG- -5'
268 5' -52.6 AC_000008.1 + 25330 0.66 0.683204
Target:  5'- uGGGCGuuugGCAGCAGUGCUuggagGAGuGCaACCu -3'
miRNA:   3'- uCUCGU----UGUUGUCGCGG-----UUC-CGaUGG- -5'
268 5' -52.6 AC_000008.1 + 30479 0.67 0.671595
Target:  5'- cAGGGCGAagacCGGCAGCGCUucaGC-ACCa -3'
miRNA:   3'- -UCUCGUU----GUUGUCGCGGuucCGaUGG- -5'
268 5' -52.6 AC_000008.1 + 24334 0.67 0.671595
Target:  5'- -aAGCAucuGCAGCGCCAGuGC-GCCa -3'
miRNA:   3'- ucUCGUuguUGUCGCGGUUcCGaUGG- -5'
268 5' -52.6 AC_000008.1 + 9479 0.67 0.668104
Target:  5'- --cGCGGCGACGGCGCauggucucggugacGGCgcgGCCg -3'
miRNA:   3'- ucuCGUUGUUGUCGCGguu-----------CCGa--UGG- -5'
268 5' -52.6 AC_000008.1 + 8669 0.67 0.659945
Target:  5'- aGGAGCugguGCuGC-GCGCguAGGUUGCUg -3'
miRNA:   3'- -UCUCGu---UGuUGuCGCGguUCCGAUGG- -5'
268 5' -52.6 AC_000008.1 + 20107 0.67 0.659945
Target:  5'- aGGGGCAGguGCGGCGUCu-GGCg--- -3'
miRNA:   3'- -UCUCGUUguUGUCGCGGuuCCGaugg -5'
268 5' -52.6 AC_000008.1 + 27950 0.67 0.659945
Target:  5'- gAGGGCccGGCGcACGGCGUCc-GGCUuACCg -3'
miRNA:   3'- -UCUCG--UUGU-UGUCGCGGuuCCGA-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.