miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26810 5' -53.9 NC_005808.1 + 5363 0.67 0.635199
Target:  5'- gGCCGCCugcaccgcGCCcaggguUAUGucacuGGUGCGCGCc -3'
miRNA:   3'- aUGGCGG--------CGGuu----GUACu----UCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 19489 0.69 0.521743
Target:  5'- uUACCGCUGUCGcCGUGGGcgccgccGUugGCGUc -3'
miRNA:   3'- -AUGGCGGCGGUuGUACUU-------CAugCGCG- -5'
26810 5' -53.9 NC_005808.1 + 803 0.73 0.320355
Target:  5'- aAUCGCCGUCAGCAggUGGcugggcuugAGcGCGCGCa -3'
miRNA:   3'- aUGGCGGCGGUUGU--ACU---------UCaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 16868 0.68 0.601065
Target:  5'- gUGCUGCCGCCG--GUGAGG-ACGaCGa -3'
miRNA:   3'- -AUGGCGGCGGUugUACUUCaUGC-GCg -5'
26810 5' -53.9 NC_005808.1 + 20174 0.73 0.312305
Target:  5'- cGCCGCCGUCAagGCGUGGcuGGcgaacgucACGCGCu -3'
miRNA:   3'- aUGGCGGCGGU--UGUACU--UCa-------UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 20363 0.66 0.714196
Target:  5'- cAUCGCgGCCGACAaccAGGgcCGCGUc -3'
miRNA:   3'- aUGGCGgCGGUUGUac-UUCauGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 16841 0.72 0.345428
Target:  5'- uUGCCGCCGcCCAGCA------GCGCGCc -3'
miRNA:   3'- -AUGGCGGC-GGUUGUacuucaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 40205 0.66 0.714196
Target:  5'- uUGCCGCC-CUGACAa-GGGUACGCacGCg -3'
miRNA:   3'- -AUGGCGGcGGUUGUacUUCAUGCG--CG- -5'
26810 5' -53.9 NC_005808.1 + 28783 0.66 0.691874
Target:  5'- -uCCGCCGaguGGCAgGAGGcacagGCGCGCa -3'
miRNA:   3'- auGGCGGCgg-UUGUaCUUCa----UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 8395 0.66 0.669305
Target:  5'- aAUCGCCGCCcACGUGucGggcaGCGaGCa -3'
miRNA:   3'- aUGGCGGCGGuUGUACuuCa---UGCgCG- -5'
26810 5' -53.9 NC_005808.1 + 16529 0.67 0.657958
Target:  5'- -cCCGCCccgaguucGCCGagcGCAUGGA--GCGCGCc -3'
miRNA:   3'- auGGCGG--------CGGU---UGUACUUcaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 9276 0.67 0.635199
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26810 5' -53.9 NC_005808.1 + 9132 0.67 0.635199
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26810 5' -53.9 NC_005808.1 + 19079 0.68 0.58973
Target:  5'- --gCGCCGCCug---GAAG-GCGCGCu -3'
miRNA:   3'- augGCGGCGGuuguaCUUCaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 28475 0.68 0.578434
Target:  5'- aGCCGCUgGCCGACG---AGUACG-GCg -3'
miRNA:   3'- aUGGCGG-CGGUUGUacuUCAUGCgCG- -5'
26810 5' -53.9 NC_005808.1 + 25041 0.68 0.577307
Target:  5'- cACCGgCGCCGACAucauucUGAccaaucaAGUcaacgcggugGCGCGCu -3'
miRNA:   3'- aUGGCgGCGGUUGU------ACU-------UCA----------UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 14022 0.68 0.567185
Target:  5'- --aCGCUGCCggUGgccGAcGUGCGCGCc -3'
miRNA:   3'- augGCGGCGGuuGUa--CUuCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 28323 0.69 0.505464
Target:  5'- cAUCGCCGaCAGCAUGGugcagcaggccaaccAGuUGCGCGUg -3'
miRNA:   3'- aUGGCGGCgGUUGUACU---------------UC-AUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 41454 0.7 0.473591
Target:  5'- gACCGCCGCCGuaGCGcGAgcuaacgguuacaccGGgccgAUGCGCg -3'
miRNA:   3'- aUGGCGGCGGU--UGUaCU---------------UCa---UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 34421 0.71 0.399675
Target:  5'- aAUCGCCGgCAGCAUccGGgcgcACGCGCa -3'
miRNA:   3'- aUGGCGGCgGUUGUAcuUCa---UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.