Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26814 | 3' | -68.1 | NC_005809.1 | + | 688 | 0.8 | 0.013248 |
Target: 5'- cGGCGGCgCCGGCCGG-GCCGCCcaAGa -3' miRNA: 3'- cCCGCCG-GGCCGGCCgCGGCGGcaUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 1031 | 0.67 | 0.132538 |
Target: 5'- uGGaaGGCCaCGGCCGGCggcagcauGUCGCCGc-- -3' miRNA: 3'- -CCcgCCGG-GCCGGCCG--------CGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 1314 | 0.68 | 0.107557 |
Target: 5'- aGGGCgacGGCCaccaGGCCGacaaGCGCgaggaaGCCGUGGu -3' miRNA: 3'- -CCCG---CCGGg---CCGGC----CGCGg-----CGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 1752 | 0.71 | 0.072205 |
Target: 5'- cGGGCGGUcauggCCGGCCuGCGCCuggcgcgucggGCCGa-- -3' miRNA: 3'- -CCCGCCG-----GGCCGGcCGCGG-----------CGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 1870 | 0.68 | 0.119441 |
Target: 5'- aGGUucaGCCCguGGCCGGCGCUgGCCGg-- -3' miRNA: 3'- cCCGc--CGGG--CCGGCCGCGG-CGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 3746 | 0.66 | 0.154676 |
Target: 5'- uGGUGGgCaC-GUCGGUGCCGCCGcUGGa -3' miRNA: 3'- cCCGCCgG-GcCGGCCGCGGCGGC-AUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 4531 | 0.67 | 0.146947 |
Target: 5'- uGGCGuGCUgGGCgGucGUGCCGCCGcGGa -3' miRNA: 3'- cCCGC-CGGgCCGgC--CGCGGCGGCaUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 4804 | 0.7 | 0.074166 |
Target: 5'- cGGCuGGCgcugcgggauugCUGGCCGGCgacagGUCGCCGUAGu -3' miRNA: 3'- cCCG-CCG------------GGCCGGCCG-----CGGCGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 4808 | 0.69 | 0.094262 |
Target: 5'- aGGCcagcuuguagaGGUCgGgGCCGGCGCCGUCGUc- -3' miRNA: 3'- cCCG-----------CCGGgC-CGGCCGCGGCGGCAuc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 5100 | 0.72 | 0.05981 |
Target: 5'- cGGcCGGCCCagcguccggugcGGCUGGCGCCGuuGa-- -3' miRNA: 3'- cCC-GCCGGG------------CCGGCCGCGGCggCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 6389 | 0.69 | 0.089392 |
Target: 5'- aGGCGcaGgCCGGCCGGC-CCGgUGUAGu -3' miRNA: 3'- cCCGC--CgGGCCGGCCGcGGCgGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 7636 | 0.67 | 0.136013 |
Target: 5'- gGGcGCGGCUCGacccacGCCGGCuCCuuGCCGUAc -3' miRNA: 3'- -CC-CGCCGGGC------CGGCCGcGG--CGGCAUc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 8170 | 0.67 | 0.125832 |
Target: 5'- -uGCGGCCCaGGaaGGCGCUGgCGUc- -3' miRNA: 3'- ccCGCCGGG-CCggCCGCGGCgGCAuc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 8215 | 0.67 | 0.139572 |
Target: 5'- uGGCGGCCaGuuCGuGCGCgGCCGUGc -3' miRNA: 3'- cCCGCCGGgCcgGC-CGCGgCGGCAUc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 9210 | 0.66 | 0.175628 |
Target: 5'- cGGCGGCgCGGCgcacguucugCGGCGCgC-CCGgcGg -3' miRNA: 3'- cCCGCCGgGCCG----------GCCGCG-GcGGCauC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 10206 | 0.7 | 0.08036 |
Target: 5'- uGGGCGGCCgGGgccUCGGCGgCGaCCGcAGc -3' miRNA: 3'- -CCCGCCGGgCC---GGCCGCgGC-GGCaUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 13187 | 0.68 | 0.11042 |
Target: 5'- uGGGC-GCCCuuGGCCGGCGUuguaCGCCu--- -3' miRNA: 3'- -CCCGcCGGG--CCGGCCGCG----GCGGcauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 13236 | 0.66 | 0.154676 |
Target: 5'- uGGUucgaGGaCuuGGCCGGCGaCCGCCa--- -3' miRNA: 3'- cCCG----CC-GggCCGGCCGC-GGCGGcauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 13324 | 0.69 | 0.094262 |
Target: 5'- aGGCGGCguaggcuuUCGGCaGGuCGCCGCCGa-- -3' miRNA: 3'- cCCGCCG--------GGCCGgCC-GCGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 14738 | 0.77 | 0.020046 |
Target: 5'- -aGCGGCgCGGCCGGCGCCaCCGcGGg -3' miRNA: 3'- ccCGCCGgGCCGGCCGCGGcGGCaUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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