Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26851 | 5' | -51.2 | NC_005809.1 | + | 26286 | 0.66 | 0.882228 |
Target: 5'- cGCGcAUCGcGCGC-GAuGGAUGCCAucaacGGa -3' miRNA: 3'- -CGU-UAGC-CGCGaCUuUCUGCGGUu----CC- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 27019 | 0.66 | 0.874227 |
Target: 5'- ----aCGGCGCcauUGAccuGGACGUgGAGGc -3' miRNA: 3'- cguuaGCCGCG---ACUu--UCUGCGgUUCC- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 14183 | 0.66 | 0.874227 |
Target: 5'- cGCGccgcCGGCGUcGAAcuGGAacaccuCGCCAAGGa -3' miRNA: 3'- -CGUua--GCCGCGaCUU--UCU------GCGGUUCC- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 22458 | 0.66 | 0.874227 |
Target: 5'- gGCAuUCGacgacgguGUGCUGGgcgccuuuuccgAAGuCGCCAAGGa -3' miRNA: 3'- -CGUuAGC--------CGCGACU------------UUCuGCGGUUCC- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 16439 | 0.66 | 0.874227 |
Target: 5'- cGCcggCGGCGUUGAAcacGGCGUCGuagaucGGGg -3' miRNA: 3'- -CGuuaGCCGCGACUUu--CUGCGGU------UCC- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 4103 | 0.66 | 0.874227 |
Target: 5'- gGUGggCGGCGCUGAAuu-CGUCGcGGu -3' miRNA: 3'- -CGUuaGCCGCGACUUucuGCGGUuCC- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 30479 | 0.66 | 0.865953 |
Target: 5'- gGUcAUCGcGUcaccuGCUGAAAGuCGUCGAGGu -3' miRNA: 3'- -CGuUAGC-CG-----CGACUUUCuGCGGUUCC- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 34516 | 0.66 | 0.865953 |
Target: 5'- aGCGAccUgGGCGCgcgucaUGGAcGGCGgCAAGGa -3' miRNA: 3'- -CGUU--AgCCGCG------ACUUuCUGCgGUUCC- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 14357 | 0.66 | 0.865953 |
Target: 5'- cGCGuggucGUCGGCGUggccgaccUGGAcaAGGCGCCGcaccugcuGGGc -3' miRNA: 3'- -CGU-----UAGCCGCG--------ACUU--UCUGCGGU--------UCC- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 19324 | 0.66 | 0.857415 |
Target: 5'- uCGAUgaaGGCGCggucuucgGAcAGGCGCCAGGcGg -3' miRNA: 3'- cGUUAg--CCGCGa-------CUuUCUGCGGUUC-C- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 34640 | 0.66 | 0.857415 |
Target: 5'- gGCcg-UGGCG-UGAAgguGGACGCCGAGc -3' miRNA: 3'- -CGuuaGCCGCgACUU---UCUGCGGUUCc -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 15418 | 0.66 | 0.839578 |
Target: 5'- cGCGugCGGCGCgUGggGGACuUCGAGu -3' miRNA: 3'- -CGUuaGCCGCG-ACuuUCUGcGGUUCc -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 10423 | 0.66 | 0.839578 |
Target: 5'- gGCAAggucgaguUCGGCcUUGAGggauucggGGGCGUCGAGGu -3' miRNA: 3'- -CGUU--------AGCCGcGACUU--------UCUGCGGUUCC- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 27726 | 0.66 | 0.839578 |
Target: 5'- aGCGugCGGCGCUGGc---CGCCAAcGGc -3' miRNA: 3'- -CGUuaGCCGCGACUuucuGCGGUU-CC- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 25510 | 0.66 | 0.839578 |
Target: 5'- cGCcuUCGuGCGCgaggUGAAGGAUucgGCCAAGa -3' miRNA: 3'- -CGuuAGC-CGCG----ACUUUCUG---CGGUUCc -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 14053 | 0.66 | 0.839577 |
Target: 5'- cGCGAaagccCGGCGCUGGgcGucguUGCCuAGGg -3' miRNA: 3'- -CGUUa----GCCGCGACUuuCu---GCGGuUCC- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 27380 | 0.67 | 0.830298 |
Target: 5'- cGCcAUCGGCGCauagGAGAaaAUGCCAugucAGGa -3' miRNA: 3'- -CGuUAGCCGCGa---CUUUc-UGCGGU----UCC- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 30171 | 0.67 | 0.829357 |
Target: 5'- gGCAGUUGGCGCcagucggUGAAggccaugaaguAGcCGCCGGGc -3' miRNA: 3'- -CGUUAGCCGCG-------ACUU-----------UCuGCGGUUCc -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 18419 | 0.67 | 0.820792 |
Target: 5'- cGCAgccGUCgaGGCGCUGGGccAGGCGCgCAGccGGc -3' miRNA: 3'- -CGU---UAG--CCGCGACUU--UCUGCG-GUU--CC- -5' |
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26851 | 5' | -51.2 | NC_005809.1 | + | 26758 | 0.67 | 0.820792 |
Target: 5'- -gAGUCcuGCGCggu-GGugGCCGAGGg -3' miRNA: 3'- cgUUAGc-CGCGacuuUCugCGGUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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