Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26857 | 5' | -52.9 | NC_005809.1 | + | 29828 | 0.66 | 0.788778 |
Target: 5'- -cGCGCCAagcgucuggGCGCGGcacccaGCACCAaCGGGc -3' miRNA: 3'- guUGUGGU---------UGCGCC------UGUGGUaGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 13939 | 0.66 | 0.788778 |
Target: 5'- gCAGCGCCGugGacuGGAUGCCcUCGGa- -3' miRNA: 3'- -GUUGUGGUugCg--CCUGUGGuAGCUca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 2943 | 0.66 | 0.778524 |
Target: 5'- -cACACCGcgucGCGCGG-CA-CGUCGAGc -3' miRNA: 3'- guUGUGGU----UGCGCCuGUgGUAGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 27193 | 0.66 | 0.778524 |
Target: 5'- cCGGC-CCGcACGCGGACGCgcuCAcCGAGg -3' miRNA: 3'- -GUUGuGGU-UGCGCCUGUG---GUaGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 23468 | 0.66 | 0.767057 |
Target: 5'- -cACGCCGGCGUGGaacagguGCGCCGU-GGGa -3' miRNA: 3'- guUGUGGUUGCGCC-------UGUGGUAgCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 36131 | 0.66 | 0.757541 |
Target: 5'- gCGACGCCuuCGCGGGCGgUGgugucgCGAGc -3' miRNA: 3'- -GUUGUGGuuGCGCCUGUgGUa-----GCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 27533 | 0.66 | 0.757541 |
Target: 5'- -cGCAUCAACGCGGGCAUCg------ -3' miRNA: 3'- guUGUGGUUGCGCCUGUGGuagcuca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 18139 | 0.66 | 0.757541 |
Target: 5'- cCGAgGCC-GCGCGcGGCACCGacaaaUCGGGc -3' miRNA: 3'- -GUUgUGGuUGCGC-CUGUGGU-----AGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 32290 | 0.66 | 0.751134 |
Target: 5'- aAACACCAGCGCGuugcgcgaccucaucGcCGCCAUCaAGg -3' miRNA: 3'- gUUGUGGUUGCGC---------------CuGUGGUAGcUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 29016 | 0.66 | 0.746837 |
Target: 5'- uCAACAUCGcCGUGGGCACC---GAGUc -3' miRNA: 3'- -GUUGUGGUuGCGCCUGUGGuagCUCA- -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 26870 | 0.66 | 0.746837 |
Target: 5'- uCGAUGCCcAgGCGGACGCCuucuucGUCGAu- -3' miRNA: 3'- -GUUGUGGuUgCGCCUGUGG------UAGCUca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 37620 | 0.66 | 0.746837 |
Target: 5'- gCAGCGCgAuACGCGG-CugCAUCGuGg -3' miRNA: 3'- -GUUGUGgU-UGCGCCuGugGUAGCuCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 22359 | 0.66 | 0.746837 |
Target: 5'- cCAACAgCCGGcCGCGGGCgcuGCCAagacCGAGg -3' miRNA: 3'- -GUUGU-GGUU-GCGCCUG---UGGUa---GCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 37524 | 0.66 | 0.745759 |
Target: 5'- ---gGCCugUGCucaagcaGGACGCCAUCGAGc -3' miRNA: 3'- guugUGGuuGCG-------CCUGUGGUAGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 23097 | 0.67 | 0.736008 |
Target: 5'- cCGACGCCAACgGCGG-CGCCcacggCGAc- -3' miRNA: 3'- -GUUGUGGUUG-CGCCuGUGGua---GCUca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 33258 | 0.67 | 0.736008 |
Target: 5'- -cGCGCCGACGUGcGcCGCCAggucgcCGAGg -3' miRNA: 3'- guUGUGGUUGCGC-CuGUGGUa-----GCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 26728 | 0.67 | 0.736008 |
Target: 5'- uGGCACCAGCacgacaCGGACGgCGuguUCGAGUc -3' miRNA: 3'- gUUGUGGUUGc-----GCCUGUgGU---AGCUCA- -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 30515 | 0.67 | 0.736008 |
Target: 5'- gGACACCAu--CGG-CGCCAUCGAc- -3' miRNA: 3'- gUUGUGGUugcGCCuGUGGUAGCUca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 11268 | 0.67 | 0.729457 |
Target: 5'- cCAGCcggGCCAccACGCGGuCGCCAggcuucgcugccacgUCGGGg -3' miRNA: 3'- -GUUG---UGGU--UGCGCCuGUGGU---------------AGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 7766 | 0.67 | 0.725069 |
Target: 5'- gCAGCACCGGCGCGaucuGCGCCggCGu-- -3' miRNA: 3'- -GUUGUGGUUGCGCc---UGUGGuaGCuca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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