miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26882 3' -54.5 NC_005809.1 + 12132 0.66 0.695574
Target:  5'- uGGCGcGACgCGCcacGCGCUGCGCu---- -3'
miRNA:   3'- -CUGCuUUGgGCG---UGCGACGCGcuuag -5'
26882 3' -54.5 NC_005809.1 + 30261 0.66 0.695574
Target:  5'- --aGAuAGCUgCGCugGUcGCGCGAGUCg -3'
miRNA:   3'- cugCU-UUGG-GCGugCGaCGCGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 13895 0.66 0.695574
Target:  5'- cGACGugGCgCGcCGCGCUG-GCGAGg- -3'
miRNA:   3'- -CUGCuuUGgGC-GUGCGACgCGCUUag -5'
26882 3' -54.5 NC_005809.1 + 32779 0.66 0.695574
Target:  5'- cGGCGAAguccGCCCucgGCACcucgcugguGCUGCGCGucugccGGUCg -3'
miRNA:   3'- -CUGCUU----UGGG---CGUG---------CGACGCGC------UUAG- -5'
26882 3' -54.5 NC_005809.1 + 42337 0.66 0.684397
Target:  5'- cGGgGAAACCCaGCGCGCcaaugccgaggUGCGCcAGUUc -3'
miRNA:   3'- -CUgCUUUGGG-CGUGCG-----------ACGCGcUUAG- -5'
26882 3' -54.5 NC_005809.1 + 12193 0.66 0.684397
Target:  5'- aACGAAACCgGCccGCGCUGCcuGCcccuGGUCg -3'
miRNA:   3'- cUGCUUUGGgCG--UGCGACG--CGc---UUAG- -5'
26882 3' -54.5 NC_005809.1 + 26574 0.66 0.684397
Target:  5'- cGGCGAccugucCCUGCGCGCgGCGCa---- -3'
miRNA:   3'- -CUGCUuu----GGGCGUGCGaCGCGcuuag -5'
26882 3' -54.5 NC_005809.1 + 24149 0.66 0.683277
Target:  5'- cGCGccuGGCCCaGCGCcucgacgGCUGCGCGcuUCg -3'
miRNA:   3'- cUGCu--UUGGG-CGUG-------CGACGCGCuuAG- -5'
26882 3' -54.5 NC_005809.1 + 31881 0.66 0.673168
Target:  5'- -cCGAGGCCgUGCGCGCUGC-CG--UCa -3'
miRNA:   3'- cuGCUUUGG-GCGUGCGACGcGCuuAG- -5'
26882 3' -54.5 NC_005809.1 + 27810 0.66 0.673168
Target:  5'- --aGAucGACaCCGaCACGCUGCGCGc--- -3'
miRNA:   3'- cugCU--UUG-GGC-GUGCGACGCGCuuag -5'
26882 3' -54.5 NC_005809.1 + 17748 0.66 0.673168
Target:  5'- uGGCGAAACCC-CAgGUgUGCaguucgagcaGCGAGUCg -3'
miRNA:   3'- -CUGCUUUGGGcGUgCG-ACG----------CGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 12384 0.66 0.673168
Target:  5'- cGGCGAGucgauGCCUGCGCGCuUGUauGCGGc-- -3'
miRNA:   3'- -CUGCUU-----UGGGCGUGCG-ACG--CGCUuag -5'
26882 3' -54.5 NC_005809.1 + 14053 0.66 0.661898
Target:  5'- cGCGaAAGCCCG-GCGCUGgGCGucGUUg -3'
miRNA:   3'- cUGC-UUUGGGCgUGCGACgCGCu-UAG- -5'
26882 3' -54.5 NC_005809.1 + 9195 0.66 0.661898
Target:  5'- cGACGuuGGCCUGCucgGCgGCGCGGcgCa -3'
miRNA:   3'- -CUGCu-UUGGGCGug-CGaCGCGCUuaG- -5'
26882 3' -54.5 NC_005809.1 + 36096 0.66 0.661898
Target:  5'- uGCG-GGCCUGCGCGgcgugcaguucCUGCGCGAc-- -3'
miRNA:   3'- cUGCuUUGGGCGUGC-----------GACGCGCUuag -5'
26882 3' -54.5 NC_005809.1 + 39034 0.66 0.661898
Target:  5'- uGGCGGGA-CUGCGCGgUGUGCGGc-- -3'
miRNA:   3'- -CUGCUUUgGGCGUGCgACGCGCUuag -5'
26882 3' -54.5 NC_005809.1 + 39001 0.66 0.65851
Target:  5'- cGCGGAucgguguacgcccaGCCCGC-UGCUGCGCuauUCg -3'
miRNA:   3'- cUGCUU--------------UGGGCGuGCGACGCGcuuAG- -5'
26882 3' -54.5 NC_005809.1 + 6264 0.66 0.650598
Target:  5'- uGCGGuuGAUCUGCGCGCUGgGCa---- -3'
miRNA:   3'- cUGCU--UUGGGCGUGCGACgCGcuuag -5'
26882 3' -54.5 NC_005809.1 + 14218 0.66 0.650598
Target:  5'- --gGAAACcauCCGCGCGCUGCcCGAc-- -3'
miRNA:   3'- cugCUUUG---GGCGUGCGACGcGCUuag -5'
26882 3' -54.5 NC_005809.1 + 21570 0.66 0.650598
Target:  5'- --gGAAGCCgGCACGaugcuuUGCuGUGAAUCg -3'
miRNA:   3'- cugCUUUGGgCGUGCg-----ACG-CGCUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.