miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26903 3' -59.8 NC_005809.1 + 13292 0.66 0.4328
Target:  5'- cGCCGauUGCagCGCGccggGGCCGGCGuuGUaGGCg -3'
miRNA:   3'- -CGGC--ACG--GCGCua--UCGGUCGC--CA-CCG- -5'
26903 3' -59.8 NC_005809.1 + 4801 0.66 0.4328
Target:  5'- cGCCGgcuggcGCUGCGGgauugcUGGCCGGCGacaGGUc -3'
miRNA:   3'- -CGGCa-----CGGCGCU------AUCGGUCGCca-CCG- -5'
26903 3' -59.8 NC_005809.1 + 13000 0.66 0.4328
Target:  5'- cGCCGUucucguacagGCCGCGc-AGCgCAGUGGcgacGGCc -3'
miRNA:   3'- -CGGCA----------CGGCGCuaUCG-GUCGCCa---CCG- -5'
26903 3' -59.8 NC_005809.1 + 37765 0.66 0.432799
Target:  5'- cGCCG-GCCagcaaucccgcaGCGccAGCCGGCGuGcugGGCg -3'
miRNA:   3'- -CGGCaCGG------------CGCuaUCGGUCGC-Ca--CCG- -5'
26903 3' -59.8 NC_005809.1 + 2108 0.66 0.432799
Target:  5'- cGCCGUGUCGuCGGUAuagauugcGCCguuGGCGaGUugcaGGCa -3'
miRNA:   3'- -CGGCACGGC-GCUAU--------CGG---UCGC-CA----CCG- -5'
26903 3' -59.8 NC_005809.1 + 35772 0.66 0.43185
Target:  5'- cGCCGUGUCccuggcugaccagGCGGUcauAGauucCCAG-GGUGGCg -3'
miRNA:   3'- -CGGCACGG-------------CGCUA---UC----GGUCgCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 19183 0.66 0.429956
Target:  5'- cCCGUGCCGcCGGcgucgaugauguucUGGCCGuucuccGCGGacaGGCu -3'
miRNA:   3'- cGGCACGGC-GCU--------------AUCGGU------CGCCa--CCG- -5'
26903 3' -59.8 NC_005809.1 + 41867 0.66 0.427123
Target:  5'- gGCCGUGgCCGacaaGAUcaucaaggaaaacccAGCCAGCGa-GGUa -3'
miRNA:   3'- -CGGCAC-GGCg---CUA---------------UCGGUCGCcaCCG- -5'
26903 3' -59.8 NC_005809.1 + 27614 0.66 0.423363
Target:  5'- gGUCGUcGCCcuugaCGAUgGGCCGGUGGUuggucGGCa -3'
miRNA:   3'- -CGGCA-CGGc----GCUA-UCGGUCGCCA-----CCG- -5'
26903 3' -59.8 NC_005809.1 + 40540 0.66 0.423362
Target:  5'- cGCCGUGUucuaucgccugCGCGAcuucGCCAGCGaGcgccugGGCc -3'
miRNA:   3'- -CGGCACG-----------GCGCUau--CGGUCGC-Ca-----CCG- -5'
26903 3' -59.8 NC_005809.1 + 14867 0.66 0.423362
Target:  5'- aCCG-GCgGCGAgccgcuGCCGGCGcGcGGCc -3'
miRNA:   3'- cGGCaCGgCGCUau----CGGUCGC-CaCCG- -5'
26903 3' -59.8 NC_005809.1 + 26702 0.66 0.404864
Target:  5'- -aCGUGCC-CGAgcaacAGaUCGGCGcGUGGCa -3'
miRNA:   3'- cgGCACGGcGCUa----UC-GGUCGC-CACCG- -5'
26903 3' -59.8 NC_005809.1 + 30559 0.66 0.404864
Target:  5'- cGCCGgccacgGCCGCGcugcUGGCCGacGUGGaaaaGGCc -3'
miRNA:   3'- -CGGCa-----CGGCGCu---AUCGGU--CGCCa---CCG- -5'
26903 3' -59.8 NC_005809.1 + 17212 0.66 0.404864
Target:  5'- cGCC-UGCC-CGGUGGCCGGCuaugcgaacUGGCc -3'
miRNA:   3'- -CGGcACGGcGCUAUCGGUCGcc-------ACCG- -5'
26903 3' -59.8 NC_005809.1 + 3783 0.66 0.404864
Target:  5'- gGUCGUGCCGaa--AGCCAGCGccUGGa -3'
miRNA:   3'- -CGGCACGGCgcuaUCGGUCGCc-ACCg -5'
26903 3' -59.8 NC_005809.1 + 9091 0.66 0.395808
Target:  5'- aCUG-GCCGCGAggccguucuuGCCGGUGGgcaGGUa -3'
miRNA:   3'- cGGCaCGGCGCUau--------CGGUCGCCa--CCG- -5'
26903 3' -59.8 NC_005809.1 + 35665 0.66 0.393117
Target:  5'- gGCCGcaaUGCCuauuuccugaugauGCGAU-GCCAGCagauGGUGGa -3'
miRNA:   3'- -CGGC---ACGG--------------CGCUAuCGGUCG----CCACCg -5'
26903 3' -59.8 NC_005809.1 + 4018 0.66 0.385999
Target:  5'- cGCCGgccaccagcgucaUGCCGCGcgGGUCgAGCGcagccgGGCg -3'
miRNA:   3'- -CGGC-------------ACGGCGCuaUCGG-UCGCca----CCG- -5'
26903 3' -59.8 NC_005809.1 + 42376 0.66 0.385999
Target:  5'- cGCCGUGUCGCccggcagcgugacGGUGcCCAGCGacaccggGGCg -3'
miRNA:   3'- -CGGCACGGCG-------------CUAUcGGUCGCca-----CCG- -5'
26903 3' -59.8 NC_005809.1 + 24711 0.66 0.385999
Target:  5'- gGCCcugGCCuaccuggGCGAcgaGGCCA-CGGUGGCg -3'
miRNA:   3'- -CGGca-CGG-------CGCUa--UCGGUcGCCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.