miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26928 3' -55.8 NC_005809.1 + 37442 0.66 0.616687
Target:  5'- cUGCGCGGcacguugcaguucaaCGGCGccaGCcGCACCGGa -3'
miRNA:   3'- -ACGCGUCa--------------GUCGCuaaCGuCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 15112 0.66 0.611075
Target:  5'- gUGCGCGGcgcgcuggcauacCAGCGccagggccUGCGGCcGCCGGg -3'
miRNA:   3'- -ACGCGUCa------------GUCGCua------ACGUCG-UGGCC- -5'
26928 3' -55.8 NC_005809.1 + 17542 0.66 0.604348
Target:  5'- cGCGUugacuugauuGGUCAGaauGAUguCGGCGCCGGu -3'
miRNA:   3'- aCGCG----------UCAGUCg--CUAacGUCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 25797 0.66 0.604348
Target:  5'- cGCGCGGcgcgcUCGGUaucGUUGaucuGCACCGGg -3'
miRNA:   3'- aCGCGUC-----AGUCGc--UAACgu--CGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 10235 0.66 0.604348
Target:  5'- aGCGaccuGGgCGGCGGUUGUcgGGaCGCCGGc -3'
miRNA:   3'- aCGCg---UCaGUCGCUAACG--UC-GUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 18822 0.66 0.604348
Target:  5'- gGCGCAGgaagCuGCGAauuUUGCgcGGCauguagaagGCCGGg -3'
miRNA:   3'- aCGCGUCa---GuCGCU---AACG--UCG---------UGGCC- -5'
26928 3' -55.8 NC_005809.1 + 7537 0.66 0.604348
Target:  5'- gUGCGCucggCGGCGugcucgaucUGCGGCGCCa- -3'
miRNA:   3'- -ACGCGuca-GUCGCua-------ACGUCGUGGcc -5'
26928 3' -55.8 NC_005809.1 + 8656 0.66 0.593157
Target:  5'- cGCGCcGUacucgcugugugCAGCGGcUGCuGCGCCGc -3'
miRNA:   3'- aCGCGuCA------------GUCGCUaACGuCGUGGCc -5'
26928 3' -55.8 NC_005809.1 + 18367 0.66 0.593157
Target:  5'- uUGC-CGG-CGGCGAgguuggccUUGCcgauGGCGCCGGu -3'
miRNA:   3'- -ACGcGUCaGUCGCU--------AACG----UCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 27865 0.66 0.593157
Target:  5'- gGCGCAGggcauggaGGCGcaacUGCAG-GCCGGg -3'
miRNA:   3'- aCGCGUCag------UCGCua--ACGUCgUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 28911 0.66 0.586459
Target:  5'- gUGCGCGGUCAuaucaccaaggacauG-GAcgGC-GCGCCGGa -3'
miRNA:   3'- -ACGCGUCAGU---------------CgCUaaCGuCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 307 0.66 0.582001
Target:  5'- cGCGCucuuccGUcCAGgGcgUGCcGUACCGGg -3'
miRNA:   3'- aCGCGu-----CA-GUCgCuaACGuCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 11250 0.66 0.570887
Target:  5'- aGCGU----GGCGAUgaggguuugcgcUGCGGCGCUGGg -3'
miRNA:   3'- aCGCGucagUCGCUA------------ACGUCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 6176 0.67 0.56535
Target:  5'- aGCGCAGgccggucuugccgCAGCGuUUGCaggugacGGCGCgCGGc -3'
miRNA:   3'- aCGCGUCa------------GUCGCuAACG-------UCGUG-GCC- -5'
26928 3' -55.8 NC_005809.1 + 13904 0.67 0.559826
Target:  5'- gGCGUcggGGUUguuccaguucagGGCGAUgucgcGCAGCGCCGu -3'
miRNA:   3'- aCGCG---UCAG------------UCGCUAa----CGUCGUGGCc -5'
26928 3' -55.8 NC_005809.1 + 31425 0.67 0.548826
Target:  5'- gUGCGCAGgCGGCcca-GCAGCagGCCGa -3'
miRNA:   3'- -ACGCGUCaGUCGcuaaCGUCG--UGGCc -5'
26928 3' -55.8 NC_005809.1 + 18716 0.67 0.548826
Target:  5'- aGCGCA-UCGGUacg-GCGGCACgGGa -3'
miRNA:   3'- aCGCGUcAGUCGcuaaCGUCGUGgCC- -5'
26928 3' -55.8 NC_005809.1 + 11041 0.67 0.536804
Target:  5'- gGCGCuGUuuccacggcaacaCAGCGAggcccaGCAGCacGCCGGc -3'
miRNA:   3'- aCGCGuCA-------------GUCGCUaa----CGUCG--UGGCC- -5'
26928 3' -55.8 NC_005809.1 + 38705 0.67 0.527037
Target:  5'- aGCGCGGccuaCAGCGA---CGGCGCCuGGu -3'
miRNA:   3'- aCGCGUCa---GUCGCUaacGUCGUGG-CC- -5'
26928 3' -55.8 NC_005809.1 + 28576 0.67 0.527037
Target:  5'- cGCGCAcGUCGGCcaccgGCAGCGuggugUCGGu -3'
miRNA:   3'- aCGCGU-CAGUCGcuaa-CGUCGU-----GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.