miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26981 3' -57.2 NC_005809.1 + 29220 0.66 0.523973
Target:  5'- -cGCGcAUgGCGUCCAGuCCGCCGa-- -3'
miRNA:   3'- gaCGUuUGgCGCAGGUC-GGUGGUcgu -5'
26981 3' -57.2 NC_005809.1 + 40318 0.66 0.522898
Target:  5'- -cGUGGugCGCGUcgaacugCCGGCCAaggcCCGGCGu -3'
miRNA:   3'- gaCGUUugGCGCA-------GGUCGGU----GGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 32525 0.66 0.502628
Target:  5'- gUGCAGGCUgGUGaugCCGGCCaggaugcugccGCCGGCGa -3'
miRNA:   3'- gACGUUUGG-CGCa--GGUCGG-----------UGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 14433 0.66 0.502628
Target:  5'- cCUGCGGcACCGUGUUgGGCgaaACCuGCGg -3'
miRNA:   3'- -GACGUU-UGGCGCAGgUCGg--UGGuCGU- -5'
26981 3' -57.2 NC_005809.1 + 30148 0.66 0.502628
Target:  5'- cCUGC--ACCGCGU-CGGaCAUCAGCGg -3'
miRNA:   3'- -GACGuuUGGCGCAgGUCgGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 27415 0.66 0.502628
Target:  5'- -aGCAAcaucaGCCGuCGcccugggcgcaUCC-GCCGCCAGCAu -3'
miRNA:   3'- gaCGUU-----UGGC-GC-----------AGGuCGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 14168 0.66 0.502628
Target:  5'- -gGCAucuACUgGCG-CCGcGCCGCCGGCGu -3'
miRNA:   3'- gaCGUu--UGG-CGCaGGU-CGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 16831 0.66 0.492098
Target:  5'- -aGCGcGCCcaGCGUgCuGCCGCCGGUg -3'
miRNA:   3'- gaCGUuUGG--CGCAgGuCGGUGGUCGu -5'
26981 3' -57.2 NC_005809.1 + 9399 0.66 0.492098
Target:  5'- aCUGCAugUCGCG-CaGGCCGCgGGCu -3'
miRNA:   3'- -GACGUuuGGCGCaGgUCGGUGgUCGu -5'
26981 3' -57.2 NC_005809.1 + 38208 0.66 0.488958
Target:  5'- gCUGCGcauCCGCcugccGUCCGGCCGauuccucugcuaccCCAGCc -3'
miRNA:   3'- -GACGUuu-GGCG-----CAGGUCGGU--------------GGUCGu -5'
26981 3' -57.2 NC_005809.1 + 20770 0.66 0.481671
Target:  5'- gCUGCAAcuGCCgGUGUCC-GCCAagaaccaggacaUCAGCAc -3'
miRNA:   3'- -GACGUU--UGG-CGCAGGuCGGU------------GGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 22266 0.66 0.481671
Target:  5'- -cGCA--UCGCaaCCGGCCGCCgAGCAa -3'
miRNA:   3'- gaCGUuuGGCGcaGGUCGGUGG-UCGU- -5'
26981 3' -57.2 NC_005809.1 + 36389 0.66 0.48167
Target:  5'- cCUGCAAacGCUGCGgcaagaCCGGCCugC-GCu -3'
miRNA:   3'- -GACGUU--UGGCGCa-----GGUCGGugGuCGu -5'
26981 3' -57.2 NC_005809.1 + 16789 0.66 0.480634
Target:  5'- -aGCGcGCCGCGcgcaUCgCGGCCAucguugccgccgcCCAGCAg -3'
miRNA:   3'- gaCGUuUGGCGC----AG-GUCGGU-------------GGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 28243 0.66 0.478563
Target:  5'- -aGCAGGCCcgGCaGUUCAGCCAaggcgcgcgccaguUCAGCAa -3'
miRNA:   3'- gaCGUUUGG--CG-CAGGUCGGU--------------GGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 19630 0.66 0.471352
Target:  5'- aUGCGGGCCGCGa-CAuCgGCCAGCGu -3'
miRNA:   3'- gACGUUUGGCGCagGUcGgUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 30654 0.66 0.471352
Target:  5'- -cGCAGACCaauuCGUCgGGCCGCUGGg- -3'
miRNA:   3'- gaCGUUUGGc---GCAGgUCGGUGGUCgu -5'
26981 3' -57.2 NC_005809.1 + 29017 0.66 0.471352
Target:  5'- -gGCGAccaggcGCCGCGcUUCGGCCaggucgauacccACCGGCGg -3'
miRNA:   3'- gaCGUU------UGGCGC-AGGUCGG------------UGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 6178 0.66 0.471352
Target:  5'- -cGCAGGCCG-GUCUuGCCG-CAGCGu -3'
miRNA:   3'- gaCGUUUGGCgCAGGuCGGUgGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 6614 0.67 0.461146
Target:  5'- -aGCAuGgCGUaGUCC-GCCGCCAGCu -3'
miRNA:   3'- gaCGUuUgGCG-CAGGuCGGUGGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.