Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26999 | 3' | -52.4 | NC_005809.1 | + | 33958 | 0.66 | 0.774647 |
Target: 5'- aAgGGCGUacCGGCcacGCCUACGCCAUc -3' miRNA: 3'- aUgUUGUAc-GCCGua-UGGAUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 2135 | 0.66 | 0.774647 |
Target: 5'- gUGCAGCAgcCGGUcaACC-GCGCCGCc -3' miRNA: 3'- -AUGUUGUacGCCGuaUGGaUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 25303 | 0.66 | 0.774647 |
Target: 5'- ----uCGUGCGGCcgGCCc-UGCCACc -3' miRNA: 3'- auguuGUACGCCGuaUGGauGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 14767 | 0.66 | 0.774647 |
Target: 5'- cGCAGCGUGuCGGUGUcgAUCUGCuUCACg -3' miRNA: 3'- aUGUUGUAC-GCCGUA--UGGAUGcGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 42236 | 0.66 | 0.774647 |
Target: 5'- gGCGagcACGUGUGGCAcgACCcccggUACGgCACg -3' miRNA: 3'- aUGU---UGUACGCCGUa-UGG-----AUGCgGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 1080 | 0.66 | 0.763915 |
Target: 5'- aAC-GCGcGCGGUAgauUGCCUugGCCGu -3' miRNA: 3'- aUGuUGUaCGCCGU---AUGGAugCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 13622 | 0.66 | 0.763915 |
Target: 5'- gACAGCAUcgguaGCGGCAgcaaguCCgGCGCgGCc -3' miRNA: 3'- aUGUUGUA-----CGCCGUau----GGaUGCGgUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 4047 | 0.66 | 0.753031 |
Target: 5'- cGCGGCGaGCGGCAgGCCaGCgGCC-Ca -3' miRNA: 3'- aUGUUGUaCGCCGUaUGGaUG-CGGuG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 42420 | 0.66 | 0.753031 |
Target: 5'- cGCAuccGCcUGCGGgGaaGCCUgGCGCCACg -3' miRNA: 3'- aUGU---UGuACGCCgUa-UGGA-UGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 8208 | 0.66 | 0.753031 |
Target: 5'- aGCGACAUgGCGGCcaguuCgUGCGCgGCc -3' miRNA: 3'- aUGUUGUA-CGCCGuau--GgAUGCGgUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 22311 | 0.66 | 0.753031 |
Target: 5'- gGCAGCAcgaugcUGCuGGcCGUGCCgaacGCGCCGa -3' miRNA: 3'- aUGUUGU------ACG-CC-GUAUGGa---UGCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 1747 | 0.66 | 0.742008 |
Target: 5'- aACAcCggGCGGuCAUggccgGCCUGCGCCugGCg -3' miRNA: 3'- aUGUuGuaCGCC-GUA-----UGGAUGCGG--UG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 16994 | 0.66 | 0.742008 |
Target: 5'- gGCcGCAgaccGCGGCGUACaacuccgACGCCGa -3' miRNA: 3'- aUGuUGUa---CGCCGUAUGga-----UGCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 33877 | 0.66 | 0.742008 |
Target: 5'- gGCAGCAaucugcGCGGCGcacACCUGgGCgGCg -3' miRNA: 3'- aUGUUGUa-----CGCCGUa--UGGAUgCGgUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 11198 | 0.66 | 0.742008 |
Target: 5'- --gAugGUGCGGUcaAUGCCgcgcaugacCGCCACg -3' miRNA: 3'- augUugUACGCCG--UAUGGau-------GCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 21850 | 0.66 | 0.738676 |
Target: 5'- aGCAGCAUGuCGGCcugauggggugcccGUGCCU-CGUCGu -3' miRNA: 3'- aUGUUGUAC-GCCG--------------UAUGGAuGCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 34105 | 0.66 | 0.730861 |
Target: 5'- -uCGGC-UGCGGCAUcgcaggccACCUcgACGCCGa -3' miRNA: 3'- auGUUGuACGCCGUA--------UGGA--UGCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 8778 | 0.66 | 0.728618 |
Target: 5'- gGCAGCAcGCGGCGcacgaugggucgGCC-GCGCCGg -3' miRNA: 3'- aUGUUGUaCGCCGUa-----------UGGaUGCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 5441 | 0.66 | 0.719603 |
Target: 5'- gGCGGCGUGggcgagguCGGUAUcgACCaucACGCCGCg -3' miRNA: 3'- aUGUUGUAC--------GCCGUA--UGGa--UGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 25200 | 0.66 | 0.719603 |
Target: 5'- gGCGcgAUGCaGGCAUACCUGuCGCagGCg -3' miRNA: 3'- aUGUugUACG-CCGUAUGGAU-GCGg-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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