miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27016 3' -62.9 NC_005832.1 + 8276 0.66 0.566283
Target:  5'- cCCGGCuCccgucaggauaucuaGGGACuccucgaagGCCGCCCUgcucaGGGgUCCg -3'
miRNA:   3'- -GGCUG-G---------------UCCUG---------CGGCGGGA-----CCCgAGG- -5'
27016 3' -62.9 NC_005832.1 + 41968 0.66 0.562394
Target:  5'- gCCGGggugagcuucucCCAGGGuuUGCCGUCUgggcacggGGGCUCg -3'
miRNA:   3'- -GGCU------------GGUCCU--GCGGCGGGa-------CCCGAGg -5'
27016 3' -62.9 NC_005832.1 + 17414 0.66 0.556574
Target:  5'- cCCGACCuGGGAacgccgaccgaaaacUGCUGCCCgaaagccGGGUUgCCc -3'
miRNA:   3'- -GGCUGG-UCCU---------------GCGGCGGGa------CCCGA-GG- -5'
27016 3' -62.9 NC_005832.1 + 93596 0.66 0.552703
Target:  5'- cCCGugCuagcGGGAgCGaucaUGCUCaGGGCUCCg -3'
miRNA:   3'- -GGCugG----UCCU-GCg---GCGGGaCCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 6577 0.66 0.552703
Target:  5'- cCCGACaaCAGGAUgGCCGUcauguCCaGGGC-CCa -3'
miRNA:   3'- -GGCUG--GUCCUG-CGGCG-----GGaCCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 3163 0.66 0.543064
Target:  5'- cCCaGAUCAGGGCGUCGgucguaugcuuuUCCUGGGUa-- -3'
miRNA:   3'- -GG-CUGGUCCUGCGGC------------GGGACCCGagg -5'
27016 3' -62.9 NC_005832.1 + 42694 0.66 0.542103
Target:  5'- uCCGGCCAGGAUGugccuaacguaguCCuCCUUGGaGC-CCu -3'
miRNA:   3'- -GGCUGGUCCUGC-------------GGcGGGACC-CGaGG- -5'
27016 3' -62.9 NC_005832.1 + 97079 0.66 0.537306
Target:  5'- -aGGcCCAGGAgGCCcugucgaccucagacGCCCUGGaGCaggCCg -3'
miRNA:   3'- ggCU-GGUCCUgCGG---------------CGGGACC-CGa--GG- -5'
27016 3' -62.9 NC_005832.1 + 55833 0.66 0.53348
Target:  5'- gCCGGUCAGGGcCGCCGUgguggUGGGgUCCa -3'
miRNA:   3'- -GGCUGGUCCU-GCGGCGgg---ACCCgAGG- -5'
27016 3' -62.9 NC_005832.1 + 41418 0.66 0.53348
Target:  5'- aUGACUaccgAGGGCGCCuCCCUGacGGCggcggCCu -3'
miRNA:   3'- gGCUGG----UCCUGCGGcGGGAC--CCGa----GG- -5'
27016 3' -62.9 NC_005832.1 + 81429 0.66 0.523957
Target:  5'- --cACCGGGACaguaGCCGCUCUuGGC-CCa -3'
miRNA:   3'- ggcUGGUCCUG----CGGCGGGAcCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 36648 0.66 0.523957
Target:  5'- nCCGGCCcuGGcguACGCCGCCUccGuGGCcgCCg -3'
miRNA:   3'- -GGCUGGu-CC---UGCGGCGGGa-C-CCGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 19713 0.66 0.523957
Target:  5'- aCCGGCCAagaccgucagggGGAcCGUCagGCCCagGGGCUUUg -3'
miRNA:   3'- -GGCUGGU------------CCU-GCGG--CGGGa-CCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 39430 0.66 0.521113
Target:  5'- cCCG-CCAGGugGaCguggacuccgucugCGCCCgcgGGGCcCCu -3'
miRNA:   3'- -GGCuGGUCCugC-G--------------GCGGGa--CCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 33580 0.66 0.514499
Target:  5'- aCCuACCuGGACGCCcuGCCUUuGGCcgCCa -3'
miRNA:   3'- -GGcUGGuCCUGCGG--CGGGAcCCGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 24816 0.66 0.514499
Target:  5'- aCGACCAacccucucucuGGGCGCagGCUUUGGGCa-- -3'
miRNA:   3'- gGCUGGU-----------CCUGCGg-CGGGACCCGagg -5'
27016 3' -62.9 NC_005832.1 + 45789 0.67 0.505112
Target:  5'- -gGGCCAGGGC-CUGUCCgagaGGCUCg -3'
miRNA:   3'- ggCUGGUCCUGcGGCGGGac--CCGAGg -5'
27016 3' -62.9 NC_005832.1 + 32576 0.67 0.505112
Target:  5'- gCGGCCAGGuacugccuccuCGCgGCCuCUGGaGCggUCCc -3'
miRNA:   3'- gGCUGGUCCu----------GCGgCGG-GACC-CG--AGG- -5'
27016 3' -62.9 NC_005832.1 + 67165 0.67 0.505112
Target:  5'- cCCGcggcccucGCCAcGGcCGCCGCCa-GGGC-CCu -3'
miRNA:   3'- -GGC--------UGGU-CCuGCGGCGGgaCCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 20965 0.67 0.504178
Target:  5'- cCUGACCgcaaagAGGACGCCugaacugGCUCUGucCUCCa -3'
miRNA:   3'- -GGCUGG------UCCUGCGG-------CGGGACccGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.