miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27027 5' -54.9 NC_005832.1 + 39798 0.66 0.918727
Target:  5'- cGGUGGguccaaccgguccuaGCG-GGGCGCCUggaucuUAGGGUUCg -3'
miRNA:   3'- -CCGCC---------------UGCuCCUGUGGG------AUCUCAAGg -5'
27027 5' -54.9 NC_005832.1 + 84765 0.66 0.916399
Target:  5'- cGUGGAcCGuGGACGCCaaaggggUAGAGgaCCu -3'
miRNA:   3'- cCGCCU-GCuCCUGUGGg------AUCUCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 1490 0.66 0.916399
Target:  5'- cGGCGaGA--GGGGCACuCCUguaGGGGUUgCCg -3'
miRNA:   3'- -CCGC-CUgcUCCUGUG-GGA---UCUCAA-GG- -5'
27027 5' -54.9 NC_005832.1 + 10191 0.66 0.916399
Target:  5'- aGGCGGugGAGaGgAUCCUcauGAcUUCCg -3'
miRNA:   3'- -CCGCCugCUCcUgUGGGAu--CUcAAGG- -5'
27027 5' -54.9 NC_005832.1 + 67597 0.66 0.91041
Target:  5'- uGCGGGC-AGGG-ACCCgGGAGacUUCCa -3'
miRNA:   3'- cCGCCUGcUCCUgUGGGaUCUC--AAGG- -5'
27027 5' -54.9 NC_005832.1 + 72567 0.66 0.91041
Target:  5'- uGgGGACGuGGGGC-CCCUGGGcUUCa -3'
miRNA:   3'- cCgCCUGC-UCCUGuGGGAUCUcAAGg -5'
27027 5' -54.9 NC_005832.1 + 11887 0.66 0.91041
Target:  5'- cGGCGG-UGAGGGCuccgucuCCCaUAGcGggCCg -3'
miRNA:   3'- -CCGCCuGCUCCUGu------GGG-AUCuCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 6865 0.66 0.904176
Target:  5'- gGGUGGuauguucCGAGucccACACCCUGGGGUagugggggaggcUCCu -3'
miRNA:   3'- -CCGCCu------GCUCc---UGUGGGAUCUCA------------AGG- -5'
27027 5' -54.9 NC_005832.1 + 5771 0.66 0.90354
Target:  5'- gGGCGucguACGAGGGucugguCACCCUgcccaggGGAGaUCCg -3'
miRNA:   3'- -CCGCc---UGCUCCU------GUGGGA-------UCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 13101 0.66 0.897701
Target:  5'- aGCcuuGAUGAGGGCGCCCUu---UUCCa -3'
miRNA:   3'- cCGc--CUGCUCCUGUGGGAucucAAGG- -5'
27027 5' -54.9 NC_005832.1 + 13017 0.66 0.890987
Target:  5'- --aGGAgGucccuGGACGCCUUcGGGUUCCc -3'
miRNA:   3'- ccgCCUgCu----CCUGUGGGAuCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 9325 0.66 0.890987
Target:  5'- uGGCc-GCGAGGA-ACUCUAGGGUgUCCu -3'
miRNA:   3'- -CCGccUGCUCCUgUGGGAUCUCA-AGG- -5'
27027 5' -54.9 NC_005832.1 + 96106 0.67 0.884038
Target:  5'- cGCGG-UGAGGuuCGCCCUggaacccuucaaGGAG-UCCa -3'
miRNA:   3'- cCGCCuGCUCCu-GUGGGA------------UCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 5775 0.67 0.884038
Target:  5'- uGGUGGACGGGGAUcccgugGCCCUuaacAGGcaacCCa -3'
miRNA:   3'- -CCGCCUGCUCCUG------UGGGA----UCUcaa-GG- -5'
27027 5' -54.9 NC_005832.1 + 92549 0.67 0.884038
Target:  5'- aGGaCGcGACGGGGACGgCUCUGGGcugCCu -3'
miRNA:   3'- -CC-GC-CUGCUCCUGU-GGGAUCUcaaGG- -5'
27027 5' -54.9 NC_005832.1 + 60270 0.67 0.871698
Target:  5'- uGCGGAucggcgcUGAGGGaagcgcuggggucucUGCCCgAGGGUUCCa -3'
miRNA:   3'- cCGCCU-------GCUCCU---------------GUGGGaUCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 100695 0.67 0.869453
Target:  5'- uGGUGG-CaGAGGAaaaACCCaAGAGgaCCa -3'
miRNA:   3'- -CCGCCuG-CUCCUg--UGGGaUCUCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 12924 0.67 0.861828
Target:  5'- aGuCGucCGAGGugACCCUGGuGUcCCu -3'
miRNA:   3'- cC-GCcuGCUCCugUGGGAUCuCAaGG- -5'
27027 5' -54.9 NC_005832.1 + 86934 0.67 0.861828
Target:  5'- cGGUGGGguUGAGGA-GCCCgugAGGGUaCCc -3'
miRNA:   3'- -CCGCCU--GCUCCUgUGGGa--UCUCAaGG- -5'
27027 5' -54.9 NC_005832.1 + 52588 0.67 0.861828
Target:  5'- cGGCcGACGuGaGAacccuCACCCUGGGG-UCCu -3'
miRNA:   3'- -CCGcCUGCuC-CU-----GUGGGAUCUCaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.