miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27030 5' -57.5 NC_005832.1 + 79849 0.66 0.789261
Target:  5'- gGCUCCcucUGGCagGGGUucuGCCUgUAUGACCc -3'
miRNA:   3'- aCGAGG---AUUG--CCCG---UGGGgGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 16357 0.66 0.78926
Target:  5'- cGcCUCCU-GCGGcCGCCgCgGUGGCCu -3'
miRNA:   3'- aC-GAGGAuUGCCcGUGGgGgUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 7458 0.66 0.77993
Target:  5'- gGCUCCUaugGACuGGGCGCacaggacaCCCAcaGCCu -3'
miRNA:   3'- aCGAGGA---UUG-CCCGUGg-------GGGUacUGG- -5'
27030 5' -57.5 NC_005832.1 + 80926 0.66 0.77993
Target:  5'- aGCUCCUGACGGacucuuggguGCAcgaucCCUCCcUGAUg -3'
miRNA:   3'- aCGAGGAUUGCC----------CGU-----GGGGGuACUGg -5'
27030 5' -57.5 NC_005832.1 + 43324 0.66 0.770462
Target:  5'- cGCcagCCUGGCGGgaGCGCCCUCAaagaaGCCc -3'
miRNA:   3'- aCGa--GGAUUGCC--CGUGGGGGUac---UGG- -5'
27030 5' -57.5 NC_005832.1 + 80327 0.66 0.760868
Target:  5'- cGUUCCUcACGGGU-CCCCUGgu-CCa -3'
miRNA:   3'- aCGAGGAuUGCCCGuGGGGGUacuGG- -5'
27030 5' -57.5 NC_005832.1 + 93699 0.66 0.760867
Target:  5'- gGuCUCCUcuGAUGGGauCCCCCAUGgAUCu -3'
miRNA:   3'- aC-GAGGA--UUGCCCguGGGGGUAC-UGG- -5'
27030 5' -57.5 NC_005832.1 + 2507 0.66 0.760867
Target:  5'- cGCUCaCUuugUGGGaGCCCCCGacGGCCu -3'
miRNA:   3'- aCGAG-GAuu-GCCCgUGGGGGUa-CUGG- -5'
27030 5' -57.5 NC_005832.1 + 91770 0.66 0.751156
Target:  5'- cGCgcaccgCCUGACGGGCuuagucaagaccACCCCgCAgagGuCCc -3'
miRNA:   3'- aCGa-----GGAUUGCCCG------------UGGGG-GUa--CuGG- -5'
27030 5' -57.5 NC_005832.1 + 95550 0.66 0.751156
Target:  5'- -aCUCUggacACGGGCuaGCCUCCGcGGCCg -3'
miRNA:   3'- acGAGGau--UGCCCG--UGGGGGUaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 39669 0.66 0.751156
Target:  5'- cUGgUCCc-GCGGGU-CCUCCcgGACCc -3'
miRNA:   3'- -ACgAGGauUGCCCGuGGGGGuaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 62246 0.66 0.751156
Target:  5'- gUGUgCCUAACuGGGacCGgCCCCGUGuCCa -3'
miRNA:   3'- -ACGaGGAUUG-CCC--GUgGGGGUACuGG- -5'
27030 5' -57.5 NC_005832.1 + 89968 0.66 0.741337
Target:  5'- --aUCaacGCGGGCACCCUCAagagcaUGACUg -3'
miRNA:   3'- acgAGgauUGCCCGUGGGGGU------ACUGG- -5'
27030 5' -57.5 NC_005832.1 + 39904 0.67 0.721413
Target:  5'- cGCUCCg---GGGgGCCUCUA-GACCc -3'
miRNA:   3'- aCGAGGauugCCCgUGGGGGUaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 78544 0.67 0.721413
Target:  5'- aGCUCCUuGCGcaGGCcguccuuuACCCUgGUGACg -3'
miRNA:   3'- aCGAGGAuUGC--CCG--------UGGGGgUACUGg -5'
27030 5' -57.5 NC_005832.1 + 77349 0.67 0.711328
Target:  5'- cGCcgCCUuguccuCGGGCGCCUCCccGAUa -3'
miRNA:   3'- aCGa-GGAuu----GCCCGUGGGGGuaCUGg -5'
27030 5' -57.5 NC_005832.1 + 41892 0.67 0.710316
Target:  5'- aGC-CCUugacgcuGACGGGUuucucccugGCCaCCAUGGCCg -3'
miRNA:   3'- aCGaGGA-------UUGCCCG---------UGGgGGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 89700 0.67 0.701174
Target:  5'- aGCUCgacaggCUGAC-GGC-CCCCC-UGGCCu -3'
miRNA:   3'- aCGAG------GAUUGcCCGuGGGGGuACUGG- -5'
27030 5' -57.5 NC_005832.1 + 5566 0.67 0.701174
Target:  5'- gGCUauggCUu-CGGGCACCCCCAccucGuCCa -3'
miRNA:   3'- aCGAg---GAuuGCCCGUGGGGGUa---CuGG- -5'
27030 5' -57.5 NC_005832.1 + 89837 0.67 0.701174
Target:  5'- aUGCUCUUGA-GGGUGCCCgCGuUGAUg -3'
miRNA:   3'- -ACGAGGAUUgCCCGUGGGgGU-ACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.