miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27034 3' -56.8 NC_005832.1 + 33350 0.66 0.829253
Target:  5'- -gCUCCGgcaaGuGCGAcACCCUCAuCUGCg -3'
miRNA:   3'- ugGAGGUg---C-CGCUuUGGGAGU-GACGg -5'
27034 3' -56.8 NC_005832.1 + 6804 0.66 0.829253
Target:  5'- uAUCUCCuuaccCGGCcucGACCCUCccacguACUGCUg -3'
miRNA:   3'- -UGGAGGu----GCCGcu-UUGGGAG------UGACGG- -5'
27034 3' -56.8 NC_005832.1 + 26054 0.66 0.829253
Target:  5'- gGCCgUCACGGCGGAGCU---GCUGUg -3'
miRNA:   3'- -UGGaGGUGCCGCUUUGGgagUGACGg -5'
27034 3' -56.8 NC_005832.1 + 36072 0.66 0.820627
Target:  5'- gACgCUCCugGGCuGGAccacgaccGCCCUggCGCUGgCg -3'
miRNA:   3'- -UG-GAGGugCCG-CUU--------UGGGA--GUGACgG- -5'
27034 3' -56.8 NC_005832.1 + 47542 0.66 0.811824
Target:  5'- gACgCUCCugGGCagcaacaaGGAuCCCgUCACcGCCg -3'
miRNA:   3'- -UG-GAGGugCCG--------CUUuGGG-AGUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 72804 0.66 0.811824
Target:  5'- aACC-CCugGGaccaaCGGGACCCUUuggGCCg -3'
miRNA:   3'- -UGGaGGugCC-----GCUUUGGGAGugaCGG- -5'
27034 3' -56.8 NC_005832.1 + 56234 0.66 0.802853
Target:  5'- gGCCaCCGCGGCuguGAaaguaaGACCCUuCACgguggcgGCCg -3'
miRNA:   3'- -UGGaGGUGCCG---CU------UUGGGA-GUGa------CGG- -5'
27034 3' -56.8 NC_005832.1 + 47197 0.66 0.802853
Target:  5'- gGCgC-CCACGucGUGGAGCCCUCGCccgGCa -3'
miRNA:   3'- -UG-GaGGUGC--CGCUUUGGGAGUGa--CGg -5'
27034 3' -56.8 NC_005832.1 + 31740 0.66 0.793722
Target:  5'- gGCCaUCACccuGGCGugcauCCCUUGCUGCUg -3'
miRNA:   3'- -UGGaGGUG---CCGCuuu--GGGAGUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 1457 0.66 0.793722
Target:  5'- cACCUCa--GGUGGAACUCUCugUcCCc -3'
miRNA:   3'- -UGGAGgugCCGCUUUGGGAGugAcGG- -5'
27034 3' -56.8 NC_005832.1 + 92739 0.66 0.792801
Target:  5'- aGCCUCC-UGGUGAGGaguuuguacuuuuCUCUCAUgaugGCCa -3'
miRNA:   3'- -UGGAGGuGCCGCUUU-------------GGGAGUGa---CGG- -5'
27034 3' -56.8 NC_005832.1 + 94566 0.66 0.792801
Target:  5'- ---cCCACGGCGGguuuaacGAgCCUCACcacGCCg -3'
miRNA:   3'- uggaGGUGCCGCU-------UUgGGAGUGa--CGG- -5'
27034 3' -56.8 NC_005832.1 + 29771 0.66 0.784441
Target:  5'- gGCCUCCACcGCc--GCCCcCGCcGCCc -3'
miRNA:   3'- -UGGAGGUGcCGcuuUGGGaGUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 58241 0.66 0.784441
Target:  5'- -gCUCCuCuGCGAGACCCUCcaucauGCagGCCa -3'
miRNA:   3'- ugGAGGuGcCGCUUUGGGAG------UGa-CGG- -5'
27034 3' -56.8 NC_005832.1 + 43401 0.66 0.784441
Target:  5'- aACC-CCACGGgGucACCUgUCAC-GCCg -3'
miRNA:   3'- -UGGaGGUGCCgCuuUGGG-AGUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 5332 0.66 0.784441
Target:  5'- cCCUCgACGGCGGggUCgUCG-UGCUc -3'
miRNA:   3'- uGGAGgUGCCGCUuuGGgAGUgACGG- -5'
27034 3' -56.8 NC_005832.1 + 12898 0.66 0.784441
Target:  5'- cGCCcUgGCGuGCGggGCCCUgCACgGCg -3'
miRNA:   3'- -UGGaGgUGC-CGCuuUGGGA-GUGaCGg -5'
27034 3' -56.8 NC_005832.1 + 87466 0.66 0.784441
Target:  5'- gACCUUguCGGCGAcagagacuCCCgUCACUgggGCCu -3'
miRNA:   3'- -UGGAGguGCCGCUuu------GGG-AGUGA---CGG- -5'
27034 3' -56.8 NC_005832.1 + 52848 0.66 0.784441
Target:  5'- gACCUuuGCGGCGGccgccGCCgCUCACU-CUg -3'
miRNA:   3'- -UGGAggUGCCGCUu----UGG-GAGUGAcGG- -5'
27034 3' -56.8 NC_005832.1 + 58942 0.67 0.775018
Target:  5'- uCC-CCAUGG-GAgugaauugGACCCaCACUGCCg -3'
miRNA:   3'- uGGaGGUGCCgCU--------UUGGGaGUGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.