miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27035 5' -60.3 NC_005832.1 + 76190 0.66 0.716234
Target:  5'- aCCCUgguccuguggACGUAGGcCGCCCCgaucucuggcuCGACGcuAGGa -3'
miRNA:   3'- gGGGA----------UGCGUCU-GCGGGG-----------GCUGC--UCC- -5'
27035 5' -60.3 NC_005832.1 + 72701 0.66 0.706516
Target:  5'- aCCCUgaaGCcCAGGgGCCCCaCGuccccACGGGGa -3'
miRNA:   3'- gGGGA---UGcGUCUgCGGGG-GC-----UGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 11750 0.66 0.706516
Target:  5'- aCCCUGC-UGGACGCuuuCCCCGGaGAGa -3'
miRNA:   3'- gGGGAUGcGUCUGCG---GGGGCUgCUCc -5'
27035 5' -60.3 NC_005832.1 + 43343 0.66 0.677038
Target:  5'- aCCCCgcaGCGcCGGAccaCGCCagCCUGGCGGGa -3'
miRNA:   3'- -GGGGa--UGC-GUCU---GCGG--GGGCUGCUCc -5'
27035 5' -60.3 NC_005832.1 + 47918 0.66 0.677038
Target:  5'- aCCCCgAgGCGGAgGUCCuggCCGA-GAGGg -3'
miRNA:   3'- -GGGGaUgCGUCUgCGGG---GGCUgCUCC- -5'
27035 5' -60.3 NC_005832.1 + 13169 0.66 0.677038
Target:  5'- cCCCCgagcugGCAGcCGUCUCCGA-GAGGc -3'
miRNA:   3'- -GGGGaug---CGUCuGCGGGGGCUgCUCC- -5'
27035 5' -60.3 NC_005832.1 + 26331 0.66 0.667132
Target:  5'- aCCUCUGCcCGGugG-CCUCGcCGGGGa -3'
miRNA:   3'- -GGGGAUGcGUCugCgGGGGCuGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 29525 0.66 0.667132
Target:  5'- cUCCCUGaGCGGAgGCCaCCagGAUGAGa -3'
miRNA:   3'- -GGGGAUgCGUCUgCGG-GGg-CUGCUCc -5'
27035 5' -60.3 NC_005832.1 + 80048 0.66 0.657198
Target:  5'- gCUCCUGCGCGcAgGCCCCCaucgcCGaAGGg -3'
miRNA:   3'- -GGGGAUGCGUcUgCGGGGGcu---GC-UCC- -5'
27035 5' -60.3 NC_005832.1 + 42426 0.66 0.657198
Target:  5'- aCCCCgugGCGGAucuggccaagcaCGUCCCUGACGgcAGGu -3'
miRNA:   3'- -GGGGaugCGUCU------------GCGGGGGCUGC--UCC- -5'
27035 5' -60.3 NC_005832.1 + 44039 0.67 0.647246
Target:  5'- gUCCUguaggugACGCAGGaaaaaagGCCCCUGuccaACGAGGa -3'
miRNA:   3'- -GGGGa------UGCGUCUg------CGGGGGC----UGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 75486 0.67 0.647246
Target:  5'- uCCCCUuucgACGCacaucaugaAGACGUcggugauguuuaCCCCGugGuGGa -3'
miRNA:   3'- -GGGGA----UGCG---------UCUGCG------------GGGGCugCuCC- -5'
27035 5' -60.3 NC_005832.1 + 43058 0.67 0.637282
Target:  5'- gUCCCUACG-AGACGCCCgaGG-GAGa -3'
miRNA:   3'- -GGGGAUGCgUCUGCGGGggCUgCUCc -5'
27035 5' -60.3 NC_005832.1 + 36667 0.67 0.627314
Target:  5'- aCgCCaACGCccuGugGCCCCCGGCccuGGc -3'
miRNA:   3'- -GgGGaUGCGu--CugCGGGGGCUGcu-CC- -5'
27035 5' -60.3 NC_005832.1 + 103522 0.67 0.61735
Target:  5'- uUCCCaaaAUGCAGaAUGCaCCCagaGACGGGGc -3'
miRNA:   3'- -GGGGa--UGCGUC-UGCG-GGGg--CUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 8116 0.67 0.61735
Target:  5'- aCCCCUGaGCAgGGCgGCCUUCGAgGAGu -3'
miRNA:   3'- -GGGGAUgCGU-CUG-CGGGGGCUgCUCc -5'
27035 5' -60.3 NC_005832.1 + 72550 0.67 0.607396
Target:  5'- ----cGCGUAGACgGUCCCCGugGGGa -3'
miRNA:   3'- ggggaUGCGUCUG-CGGGGGCugCUCc -5'
27035 5' -60.3 NC_005832.1 + 42389 0.67 0.594484
Target:  5'- gCCCUccucauggagcagcACGCGucCGCCCCCGAgGAc- -3'
miRNA:   3'- gGGGA--------------UGCGUcuGCGGGGGCUgCUcc -5'
27035 5' -60.3 NC_005832.1 + 80943 0.68 0.577667
Target:  5'- cCCCCUGuuUGCAGcgaaGCUCCUGACGGa- -3'
miRNA:   3'- -GGGGAU--GCGUCug--CGGGGGCUGCUcc -5'
27035 5' -60.3 NC_005832.1 + 30165 0.68 0.577667
Target:  5'- -gCUUGCGguG-CGCuCCCCuGCGAGGu -3'
miRNA:   3'- ggGGAUGCguCuGCG-GGGGcUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.