miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27036 5' -62.1 NC_005832.1 + 19742 0.66 0.58822
Target:  5'- gGCCCaggGGCuUUGGgGGAggcagguuccCCCCGAGGCGc -3'
miRNA:   3'- -UGGGg--UCG-GACUgCCU----------GGGGCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 91672 0.66 0.588219
Target:  5'- aACCCUuuGCCUGGaagauugcuaGGACCCUG-GACc -3'
miRNA:   3'- -UGGGGu-CGGACUg---------CCUGGGGCuCUGc -5'
27036 5' -62.1 NC_005832.1 + 43753 0.66 0.578303
Target:  5'- uACCCCcaaaagAGCCUGGUGGACUCUagguccguaaaGAGGCu -3'
miRNA:   3'- -UGGGG------UCGGACUGCCUGGGG-----------CUCUGc -5'
27036 5' -62.1 NC_005832.1 + 74714 0.66 0.578303
Target:  5'- uCUCCAGUCUuuACGGACCCCGGc--- -3'
miRNA:   3'- uGGGGUCGGAc-UGCCUGGGGCUcugc -5'
27036 5' -62.1 NC_005832.1 + 80828 0.66 0.578302
Target:  5'- aACCCCuccagGGCCcuggagggGACGGGguCCUCGuAGACGg -3'
miRNA:   3'- -UGGGG-----UCGGa-------CUGCCU--GGGGC-UCUGC- -5'
27036 5' -62.1 NC_005832.1 + 32713 0.66 0.568422
Target:  5'- uCUCgGGCCUGAagggaaGGACgUUGGGACGg -3'
miRNA:   3'- uGGGgUCGGACUg-----CCUGgGGCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 36898 0.66 0.568422
Target:  5'- cACCaCCAGaaaCUacACcGACCCCGAGGCGu -3'
miRNA:   3'- -UGG-GGUCg--GAc-UGcCUGGGGCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 1717 0.66 0.568422
Target:  5'- cGCCCCGGUguuuagGA-GGACgUCCGAGGCGu -3'
miRNA:   3'- -UGGGGUCGga----CUgCCUG-GGGCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 32806 0.66 0.568422
Target:  5'- uCUCgGGCCUGAagggaaGGACgUUGGGACGg -3'
miRNA:   3'- uGGGgUCGGACUg-----CCUGgGGCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 47937 0.66 0.558585
Target:  5'- uCUCUcgaGGCC-GACGacuACCCCGAGGCGg -3'
miRNA:   3'- uGGGG---UCGGaCUGCc--UGGGGCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 43326 0.66 0.548796
Target:  5'- cACgCCAGCCUGGCGGgagcGCCCUcaaAGAa- -3'
miRNA:   3'- -UGgGGUCGGACUGCC----UGGGGc--UCUgc -5'
27036 5' -62.1 NC_005832.1 + 14170 0.66 0.548796
Target:  5'- --gCCGGUUUGACGGcuGCCaUCGGGACGg -3'
miRNA:   3'- uggGGUCGGACUGCC--UGG-GGCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 6068 0.66 0.548796
Target:  5'- -aCCUGGCCUGG-GGACCCugCGGGAgGu -3'
miRNA:   3'- ugGGGUCGGACUgCCUGGG--GCUCUgC- -5'
27036 5' -62.1 NC_005832.1 + 48030 0.66 0.539061
Target:  5'- aACgCCAuGCCcaaaGACaGGCCCgGAGACGa -3'
miRNA:   3'- -UGgGGU-CGGa---CUGcCUGGGgCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 4747 0.66 0.539061
Target:  5'- gAUCCCAuCCUGgggucguaaACGGACCCCgucucugccuuGAGGCa -3'
miRNA:   3'- -UGGGGUcGGAC---------UGCCUGGGG-----------CUCUGc -5'
27036 5' -62.1 NC_005832.1 + 10860 0.66 0.529387
Target:  5'- gACCCgCgucgGGCCUGGCGG-CCuuGAGGu- -3'
miRNA:   3'- -UGGG-G----UCGGACUGCCuGGggCUCUgc -5'
27036 5' -62.1 NC_005832.1 + 36973 0.66 0.528422
Target:  5'- uACCCCcaucccguuaaaaAGUCUGACgaGGACCUUgaagGAGGCGg -3'
miRNA:   3'- -UGGGG-------------UCGGACUG--CCUGGGG----CUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 13016 0.67 0.510235
Target:  5'- gGCCCCuGGuCUUGACGaGCCUCucgGAGACGg -3'
miRNA:   3'- -UGGGG-UC-GGACUGCcUGGGG---CUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 47729 0.67 0.510234
Target:  5'- aGCUCU-GCCUGACGGgcauggcgGCCgCGAGGCc -3'
miRNA:   3'- -UGGGGuCGGACUGCC--------UGGgGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 92872 0.67 0.504545
Target:  5'- gGCuCCCAGggacuuuaucugguaCCUGGCGaAUCCUGAGGCGu -3'
miRNA:   3'- -UG-GGGUC---------------GGACUGCcUGGGGCUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.