miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27057 5' -57.7 NC_005832.1 + 18203 0.66 0.773368
Target:  5'- cAGcGCCCUgUGcaGCAgCaGCAGCGCCCUg -3'
miRNA:   3'- -UC-CGGGAgAUc-CGU-GaUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 18098 0.66 0.773368
Target:  5'- cAGcGCCCUgUGcaGCAgCaGCAACGCCCUg -3'
miRNA:   3'- -UC-CGGGAgAUc-CGU-GaUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 18161 0.66 0.773368
Target:  5'- cAGcGCCCUgUGcaGCAgCaGCAGCGCCCUg -3'
miRNA:   3'- -UC-CGGGAgAUc-CGU-GaUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 67544 0.66 0.763784
Target:  5'- cGGCCCacUCUGGGaaagaguCAAggucCGCCCCg -3'
miRNA:   3'- uCCGGG--AGAUCCgugau--GUU----GCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 13003 0.66 0.763784
Target:  5'- -cGCCUUC-GGGUucccCUACGcagACGCCCCc -3'
miRNA:   3'- ucCGGGAGaUCCGu---GAUGU---UGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 5192 0.66 0.754079
Target:  5'- aAGGCCCU---GGaGC-ACGACGaCCCCg -3'
miRNA:   3'- -UCCGGGAgauCCgUGaUGUUGC-GGGG- -5'
27057 5' -57.7 NC_005832.1 + 52655 0.66 0.754079
Target:  5'- cGGGCUCg--GGGCACaGCAugACGUuaCCCg -3'
miRNA:   3'- -UCCGGGagaUCCGUGaUGU--UGCG--GGG- -5'
27057 5' -57.7 NC_005832.1 + 103976 0.66 0.754079
Target:  5'- uGGCCCUgaGGGcCGCcGCgGACGCCg- -3'
miRNA:   3'- uCCGGGAgaUCC-GUGaUG-UUGCGGgg -5'
27057 5' -57.7 NC_005832.1 + 50712 0.66 0.754079
Target:  5'- gAGGCUg---AGGCugUACGACGCUggguCCa -3'
miRNA:   3'- -UCCGGgagaUCCGugAUGUUGCGG----GG- -5'
27057 5' -57.7 NC_005832.1 + 81159 0.66 0.744264
Target:  5'- cGGGgCCUUgcGGUGC--CGugGCCCCu -3'
miRNA:   3'- -UCCgGGAGauCCGUGauGUugCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 72650 0.66 0.734346
Target:  5'- uGGGCCCgcgGGGCc---CGACGgCCCa -3'
miRNA:   3'- -UCCGGGagaUCCGugauGUUGCgGGG- -5'
27057 5' -57.7 NC_005832.1 + 29881 0.66 0.734346
Target:  5'- gAGGCCaagaugAGGCACacgGCAGcCGUCCUg -3'
miRNA:   3'- -UCCGGgaga--UCCGUGa--UGUU-GCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 1804 0.66 0.724337
Target:  5'- cGGUCCUCacgaGCACUACGACuacaCCCu -3'
miRNA:   3'- uCCGGGAGauc-CGUGAUGUUGcg--GGG- -5'
27057 5' -57.7 NC_005832.1 + 5587 0.66 0.724337
Target:  5'- gAGGCCCUCUcacGGGgACcacauggagACGGCGgacggaucuCCCCu -3'
miRNA:   3'- -UCCGGGAGA---UCCgUGa--------UGUUGC---------GGGG- -5'
27057 5' -57.7 NC_005832.1 + 53202 0.66 0.724337
Target:  5'- uGGCCCUgUAGGCcaggGCAGCcUUCCa -3'
miRNA:   3'- uCCGGGAgAUCCGuga-UGUUGcGGGG- -5'
27057 5' -57.7 NC_005832.1 + 90748 0.67 0.714246
Target:  5'- gAGGCUagaCUCUgAGGUGCU-CGACGCCa- -3'
miRNA:   3'- -UCCGG---GAGA-UCCGUGAuGUUGCGGgg -5'
27057 5' -57.7 NC_005832.1 + 42387 0.67 0.704082
Target:  5'- cGGCCCUCcucaUGGagcaGCAC-GCGucCGCCCCc -3'
miRNA:   3'- uCCGGGAG----AUC----CGUGaUGUu-GCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 78794 0.67 0.704082
Target:  5'- cGGCCaCUCUgGGGCggGCUugAAC-CCCg -3'
miRNA:   3'- uCCGG-GAGA-UCCG--UGAugUUGcGGGg -5'
27057 5' -57.7 NC_005832.1 + 66307 0.67 0.704082
Target:  5'- uGGCCUccuUCccgAGGUACgAgAACGUCCCg -3'
miRNA:   3'- uCCGGG---AGa--UCCGUGaUgUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 11573 0.67 0.704082
Target:  5'- cGGCCCUCcucauGGCgACgucCGACGCCa- -3'
miRNA:   3'- uCCGGGAGau---CCG-UGau-GUUGCGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.