miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27126 3' -63.4 NC_005832.1 + 6703 0.66 0.506215
Target:  5'- gGGGGcAGGAGGAGccucCCCCACUaccccaGGGUg -3'
miRNA:   3'- -CUCC-UCCUCUUCc---GGGGUGGg-----CCCGg -5'
27126 3' -63.4 NC_005832.1 + 80562 0.66 0.506215
Target:  5'- cAGGGGGGGcauGGGCCaaguCACCaGGGUa -3'
miRNA:   3'- cUCCUCCUCu--UCCGGg---GUGGgCCCGg -5'
27126 3' -63.4 NC_005832.1 + 80348 0.66 0.4968
Target:  5'- -uGGGGGAGAAGGUCaguaUGCCguuccucaCGGGUCc -3'
miRNA:   3'- cuCCUCCUCUUCCGGg---GUGG--------GCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 54014 0.66 0.496799
Target:  5'- gGAGGAGGcuGGGGCugCCCGCCCucGUCc -3'
miRNA:   3'- -CUCCUCCucUUCCG--GGGUGGGccCGG- -5'
27126 3' -63.4 NC_005832.1 + 46269 0.66 0.496799
Target:  5'- gGAGGAGGAaaGAcGGaagaCaCCGCCUuGGCCa -3'
miRNA:   3'- -CUCCUCCU--CUuCCg---G-GGUGGGcCCGG- -5'
27126 3' -63.4 NC_005832.1 + 44126 0.66 0.487463
Target:  5'- aAGGAcgGGAGGAGGUCCCGC--GGGaCUg -3'
miRNA:   3'- cUCCU--CCUCUUCCGGGGUGggCCC-GG- -5'
27126 3' -63.4 NC_005832.1 + 72692 0.66 0.481902
Target:  5'- cAGGGGuuuAGGAGGCCCUcccggagauaggggcGCggaCGGGCCg -3'
miRNA:   3'- cUCCUCc--UCUUCCGGGG---------------UGg--GCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 49158 0.66 0.478211
Target:  5'- aAGGGcGAGAGcguguGGaCCCACCUGGGUCc -3'
miRNA:   3'- cUCCUcCUCUU-----CCgGGGUGGGCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 38370 0.66 0.478211
Target:  5'- uGAGGugguccAGGuAGAGGGCuCCCACCUcuacguccagcuGGGUa -3'
miRNA:   3'- -CUCC------UCC-UCUUCCG-GGGUGGG------------CCCGg -5'
27126 3' -63.4 NC_005832.1 + 19943 0.66 0.47729
Target:  5'- -uGGGGGuGGAGGUCCUcggggcaucuccaGCCCGGacGUCa -3'
miRNA:   3'- cuCCUCCuCUUCCGGGG-------------UGGGCC--CGG- -5'
27126 3' -63.4 NC_005832.1 + 27104 0.66 0.469046
Target:  5'- cGAGGAGGGGAccguaaAGuGCCCCGggUgCGGGa- -3'
miRNA:   3'- -CUCCUCCUCU------UC-CGGGGU--GgGCCCgg -5'
27126 3' -63.4 NC_005832.1 + 11689 0.66 0.468135
Target:  5'- uGAGGAGGgccguccAGGAcGaCCCCGCCUuuGGCCa -3'
miRNA:   3'- -CUCCUCC-------UCUUcC-GGGGUGGGc-CCGG- -5'
27126 3' -63.4 NC_005832.1 + 31505 0.66 0.457268
Target:  5'- aGAGGcGGuGGGGAGGaCCUACCUgucgucguaaaaaaGGGCCu -3'
miRNA:   3'- -CUCC-UC-CUCUUCCgGGGUGGG--------------CCCGG- -5'
27126 3' -63.4 NC_005832.1 + 6838 0.67 0.454572
Target:  5'- uGGGGuaguGGGGGAGGCUCCuccugccCCCGucuaucuccuuacccGGCCu -3'
miRNA:   3'- -CUCCu---CCUCUUCCGGGGu------GGGC---------------CCGG- -5'
27126 3' -63.4 NC_005832.1 + 87216 0.67 0.450992
Target:  5'- uGAGGAGaguGAGGuGGGCCaCCAgCCUGGuGUCg -3'
miRNA:   3'- -CUCCUC---CUCU-UCCGG-GGU-GGGCC-CGG- -5'
27126 3' -63.4 NC_005832.1 + 6504 0.67 0.450991
Target:  5'- cGAGGAcGGGGugucuguGGCCCUgugCgGGGCCa -3'
miRNA:   3'- -CUCCU-CCUCuu-----CCGGGGug-GgCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 74513 0.67 0.450991
Target:  5'- aGGGAGGAGGuaaaaauGGCucagCCUACCaGGGCg -3'
miRNA:   3'- cUCCUCCUCUu------CCG----GGGUGGgCCCGg -5'
27126 3' -63.4 NC_005832.1 + 86979 0.67 0.450991
Target:  5'- -cGGAGGcgucaaAGAAGGCCCUgACCaUGaGGCUg -3'
miRNA:   3'- cuCCUCC------UCUUCCGGGG-UGG-GC-CCGG- -5'
27126 3' -63.4 NC_005832.1 + 27200 0.67 0.450099
Target:  5'- cGAGGAguacGGAGAaggGGGCUCCGgguucuCCCacggacguuucgcGGGCCu -3'
miRNA:   3'- -CUCCU----CCUCU---UCCGGGGU------GGG-------------CCCGG- -5'
27126 3' -63.4 NC_005832.1 + 54012 0.67 0.433325
Target:  5'- uGAGGucuGGGAGAgacGGaGCCCCucuCCCuGGCg -3'
miRNA:   3'- -CUCC---UCCUCU---UC-CGGGGu--GGGcCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.