Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27139 | 3' | -52.6 | NC_005832.1 | + | 62090 | 0.66 | 0.971453 |
Target: 5'- cUCUGUCCCga--GGACg--GGGAUGGa -3' miRNA: 3'- -GGACAGGGggagCCUGaaaUUCUGCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 13124 | 0.66 | 0.971453 |
Target: 5'- gCCUGgacCCCagCCUgaCGGACcccGAGACGGu -3' miRNA: 3'- -GGACa--GGG--GGA--GCCUGaaaUUCUGCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 7888 | 0.66 | 0.971453 |
Target: 5'- uCCUGUgccaUCCCCUgGcaGACUggGAGAgGGu -3' miRNA: 3'- -GGACA----GGGGGAgC--CUGAaaUUCUgCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 80316 | 0.66 | 0.971162 |
Target: 5'- --gGUCCCCUgguccagUCGGAUg--GAGGCGu -3' miRNA: 3'- ggaCAGGGGG-------AGCCUGaaaUUCUGCc -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 44536 | 0.66 | 0.968444 |
Target: 5'- -aUGUCCUCCUgGGuC---AGGACGGc -3' miRNA: 3'- ggACAGGGGGAgCCuGaaaUUCUGCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 6195 | 0.66 | 0.966534 |
Target: 5'- cUCUGUCCuCCCguccacccugacugUGGACUguggAGGAgGGu -3' miRNA: 3'- -GGACAGG-GGGa-------------GCCUGAaa--UUCUgCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 12688 | 0.66 | 0.965217 |
Target: 5'- gCCgagGgCCUCCUUGGACUUUAAuguuGACa- -3' miRNA: 3'- -GGa--CaGGGGGAGCCUGAAAUU----CUGcc -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 75821 | 0.66 | 0.961407 |
Target: 5'- aCCUGcaaaagcacaggaUCCCCUUCGauCUgagGAGGCGGu -3' miRNA: 3'- -GGAC-------------AGGGGGAGCcuGAaa-UUCUGCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 44645 | 0.66 | 0.958082 |
Target: 5'- --cGUCCUCuaCUCGGGCUc---GACGGg -3' miRNA: 3'- ggaCAGGGG--GAGCCUGAaauuCUGCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 43194 | 0.66 | 0.958082 |
Target: 5'- aCCUuuUCUCCCUCGGGCgucucgUAGGGacacaGGa -3' miRNA: 3'- -GGAc-AGGGGGAGCCUGaa----AUUCUg----CC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 63062 | 0.66 | 0.9577 |
Target: 5'- aCCUGUCCgggggugUUCUUGGACUUgAGGAguuUGGg -3' miRNA: 3'- -GGACAGG-------GGGAGCCUGAAaUUCU---GCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 80522 | 0.66 | 0.956931 |
Target: 5'- uCCUGggcuccagguucgUCCCgUCGGGCUacaggaggucggugGAGACGGg -3' miRNA: 3'- -GGACa------------GGGGgAGCCUGAaa------------UUCUGCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 41425 | 0.67 | 0.950003 |
Target: 5'- ---cUCUCCUgUCGGACUUUAGGuccACGGg -3' miRNA: 3'- ggacAGGGGG-AGCCUGAAAUUC---UGCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 20523 | 0.67 | 0.9456 |
Target: 5'- cUCUGagggCCCCCgUGGACccucugggAGGACGGu -3' miRNA: 3'- -GGACa---GGGGGaGCCUGaaa-----UUCUGCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 38870 | 0.67 | 0.940471 |
Target: 5'- gCCUGUCCcauaCCCUgGGuaaagugGCUUauAGAUGGa -3' miRNA: 3'- -GGACAGG----GGGAgCC-------UGAAauUCUGCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 87124 | 0.67 | 0.936049 |
Target: 5'- aCUGUCCCCUgaggggaUGGugUUUucggAAGACGc -3' miRNA: 3'- gGACAGGGGGa------GCCugAAA----UUCUGCc -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 35138 | 0.68 | 0.930898 |
Target: 5'- gCCUGUCCcugCCUUCGGACa--GGGGCc- -3' miRNA: 3'- -GGACAGG---GGGAGCCUGaaaUUCUGcc -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 88271 | 0.68 | 0.930898 |
Target: 5'- gCCUGgccagggUCCUCUCGGAgaUUAcgcucaGGGCGGu -3' miRNA: 3'- -GGACa------GGGGGAGCCUgaAAU------UCUGCC- -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 72413 | 0.68 | 0.925495 |
Target: 5'- cCCggGUCCaCCCggGGACUcUUGAGACu- -3' miRNA: 3'- -GGa-CAGG-GGGagCCUGA-AAUUCUGcc -5' |
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27139 | 3' | -52.6 | NC_005832.1 | + | 11900 | 0.68 | 0.925495 |
Target: 5'- uCC-GUCUCCCauagCGGGCcgcAAGACGGc -3' miRNA: 3'- -GGaCAGGGGGa---GCCUGaaaUUCUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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