miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27140 3' -53.6 NC_005832.1 + 77142 0.66 0.924866
Target:  5'- cCAGACGCCAgcUGGCuuACugCuuucacCGGCGa -3'
miRNA:   3'- -GUCUGUGGU--GUCGuuUGugGu-----GCCGU- -5'
27140 3' -53.6 NC_005832.1 + 97889 0.66 0.924866
Target:  5'- uUAGAguCCAguGaguuUACCACGGCAg -3'
miRNA:   3'- -GUCUguGGUguCguuuGUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 30184 0.66 0.924866
Target:  5'- gCGGGCuCCGCAG-GAAUACCuguaACGGCu -3'
miRNA:   3'- -GUCUGuGGUGUCgUUUGUGG----UGCCGu -5'
27140 3' -53.6 NC_005832.1 + 36624 0.66 0.921405
Target:  5'- -cGugGCCGCcggcuacgucuuuacGGCGGGCccCCACGGCu -3'
miRNA:   3'- guCugUGGUG---------------UCGUUUGu-GGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 49322 0.66 0.919046
Target:  5'- aUAGACAUUuCcGCAAACGCCACGuCGg -3'
miRNA:   3'- -GUCUGUGGuGuCGUUUGUGGUGCcGU- -5'
27140 3' -53.6 NC_005832.1 + 20095 0.66 0.919046
Target:  5'- uGGACAUgGCGGCAGAgGgCAaagacaGGCAc -3'
miRNA:   3'- gUCUGUGgUGUCGUUUgUgGUg-----CCGU- -5'
27140 3' -53.6 NC_005832.1 + 104681 0.66 0.917249
Target:  5'- gAGACGCCGauaaccucaagaccUAGUuccgcGACGCUACGGUAa -3'
miRNA:   3'- gUCUGUGGU--------------GUCGu----UUGUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 96780 0.66 0.912963
Target:  5'- uGGACACaGCAGgAgggggugacAACGuCCACGGCGu -3'
miRNA:   3'- gUCUGUGgUGUCgU---------UUGU-GGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 94668 0.66 0.912963
Target:  5'- uGGACACCcuguACGGCAccaggAACGCCA-GGUu -3'
miRNA:   3'- gUCUGUGG----UGUCGU-----UUGUGGUgCCGu -5'
27140 3' -53.6 NC_005832.1 + 67089 0.66 0.912963
Target:  5'- aAGACACCagGCAGCAGAUgucguGCCACu--- -3'
miRNA:   3'- gUCUGUGG--UGUCGUUUG-----UGGUGccgu -5'
27140 3' -53.6 NC_005832.1 + 95353 0.66 0.912963
Target:  5'- aGGACcguaaaGCCGgGGCGGucuggguucuGCGCCACGGaCAa -3'
miRNA:   3'- gUCUG------UGGUgUCGUU----------UGUGGUGCC-GU- -5'
27140 3' -53.6 NC_005832.1 + 55540 0.66 0.908548
Target:  5'- cCAGuCcCCACGGCAggagacaucucggagGACGCCAcacugucCGGCAu -3'
miRNA:   3'- -GUCuGuGGUGUCGU---------------UUGUGGU-------GCCGU- -5'
27140 3' -53.6 NC_005832.1 + 20161 0.66 0.906617
Target:  5'- uGGugGCgCACAGCAucgcguccgcCGCCugGGUg -3'
miRNA:   3'- gUCugUG-GUGUCGUuu--------GUGGugCCGu -5'
27140 3' -53.6 NC_005832.1 + 3753 0.66 0.906617
Target:  5'- gUAGACAgUcCGGCuacgucCACCAUGGCAg -3'
miRNA:   3'- -GUCUGUgGuGUCGuuu---GUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 19904 0.66 0.900013
Target:  5'- aCGGGCGCCGgGGgaAAGCGCCuCGGgGg -3'
miRNA:   3'- -GUCUGUGGUgUCg-UUUGUGGuGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 75543 0.66 0.900013
Target:  5'- --aGCACuCACAGUGugaGCCACGGCc -3'
miRNA:   3'- gucUGUG-GUGUCGUuugUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 29917 0.66 0.900013
Target:  5'- aCAGAgGCCuggucugggGCGGCGGGgGCgGCGGUg -3'
miRNA:   3'- -GUCUgUGG---------UGUCGUUUgUGgUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 66781 0.66 0.900013
Target:  5'- gAGACcugaCACAGCAcgGACGCCACGu-- -3'
miRNA:   3'- gUCUGug--GUGUCGU--UUGUGGUGCcgu -5'
27140 3' -53.6 NC_005832.1 + 31883 0.66 0.899338
Target:  5'- gGGAUGCaGCAGCAAgggaugcACGCCAgGGUg -3'
miRNA:   3'- gUCUGUGgUGUCGUU-------UGUGGUgCCGu -5'
27140 3' -53.6 NC_005832.1 + 56202 0.66 0.899338
Target:  5'- aGGGCACCGuaaccguCGGUGGACuugagcuuggccACCGCGGCu -3'
miRNA:   3'- gUCUGUGGU-------GUCGUUUG------------UGGUGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.