miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27176 5' -58.6 NC_005832.1 + 43782 0.66 0.750956
Target:  5'- gUCCguaaaGAGGCUGgguuUCgacgagauggCCCACGG-GGCCc -3'
miRNA:   3'- -GGGa----CUCCGAC----AGa---------GGGUGUCuCCGG- -5'
27176 5' -58.6 NC_005832.1 + 15816 0.66 0.750956
Target:  5'- gCCgggaGAGGCg--CUCCa--AGAGGCCc -3'
miRNA:   3'- gGGa---CUCCGacaGAGGgugUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 20486 0.66 0.750956
Target:  5'- cCCUUGAuGCUGUaaCCCGCcacccaAGGGGCg -3'
miRNA:   3'- -GGGACUcCGACAgaGGGUG------UCUCCGg -5'
27176 5' -58.6 NC_005832.1 + 56019 0.66 0.741251
Target:  5'- gCCCUG-GGUcuUGcccccggaUCUCCCuugcccuggUAGAGGCCg -3'
miRNA:   3'- -GGGACuCCG--AC--------AGAGGGu--------GUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 19771 0.66 0.741251
Target:  5'- cCCCcGAGGCgcUUUCCCcCGgcgcccguggacGAGGCCg -3'
miRNA:   3'- -GGGaCUCCGacAGAGGGuGU------------CUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 7942 0.66 0.741251
Target:  5'- cCCCUGAGGagcCUGUaggaCUCUaCACcgGGAGuGCCg -3'
miRNA:   3'- -GGGACUCC---GACA----GAGG-GUG--UCUC-CGG- -5'
27176 5' -58.6 NC_005832.1 + 19856 0.66 0.741251
Target:  5'- cCCCUG-GGCcugacgGUCcCCCugACGGucuuGGCCg -3'
miRNA:   3'- -GGGACuCCGa-----CAGaGGG--UGUCu---CCGG- -5'
27176 5' -58.6 NC_005832.1 + 80467 0.66 0.73145
Target:  5'- aUCCUGAgaacGGacacugGUUUCCC-CAGGGGCa -3'
miRNA:   3'- -GGGACU----CCga----CAGAGGGuGUCUCCGg -5'
27176 5' -58.6 NC_005832.1 + 81612 0.66 0.73145
Target:  5'- -aCUGcauGGGCU--UUCCCuCGGAGGCCc -3'
miRNA:   3'- ggGAC---UCCGAcaGAGGGuGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 19729 0.66 0.721563
Target:  5'- cUCCUGcGGCggGUUUCCCucuuACGGcGGGUCg -3'
miRNA:   3'- -GGGACuCCGa-CAGAGGG----UGUC-UCCGG- -5'
27176 5' -58.6 NC_005832.1 + 4711 0.66 0.721563
Target:  5'- gCCUUGAGGCaggacuuggUGaCUUCCACgaccgaGGuGGCCa -3'
miRNA:   3'- -GGGACUCCG---------ACaGAGGGUG------UCuCCGG- -5'
27176 5' -58.6 NC_005832.1 + 30482 0.66 0.72057
Target:  5'- cCUCUGAaagGGUUGUCUCUCACAagacucuuuacgaGAGGg- -3'
miRNA:   3'- -GGGACU---CCGACAGAGGGUGU-------------CUCCgg -5'
27176 5' -58.6 NC_005832.1 + 16729 0.66 0.711599
Target:  5'- gCCCUGGcGGUgga-UCCCAUcaAGAGcGCCa -3'
miRNA:   3'- -GGGACU-CCGacagAGGGUG--UCUC-CGG- -5'
27176 5' -58.6 NC_005832.1 + 27184 0.66 0.711599
Target:  5'- ---gGGGGCUccggguUCUCCCACGGAcguuucgcgGGCCu -3'
miRNA:   3'- gggaCUCCGAc-----AGAGGGUGUCU---------CCGG- -5'
27176 5' -58.6 NC_005832.1 + 97195 0.66 0.711599
Target:  5'- cUCCUG-GGCcuUGcCUCCgagcacgucguaCugGGAGGCCa -3'
miRNA:   3'- -GGGACuCCG--ACaGAGG------------GugUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 73085 0.66 0.710598
Target:  5'- aCCCUGGGGUccGUCgggaCCUACGGgacccuguauaccGGGCUc -3'
miRNA:   3'- -GGGACUCCGa-CAGa---GGGUGUC-------------UCCGG- -5'
27176 5' -58.6 NC_005832.1 + 36247 0.66 0.701567
Target:  5'- aCCUUGAGGCcGUaCUuggagaggaccCUCGCGGcGGCCu -3'
miRNA:   3'- -GGGACUCCGaCA-GA-----------GGGUGUCuCCGG- -5'
27176 5' -58.6 NC_005832.1 + 7722 0.66 0.701567
Target:  5'- gCUcGAGGCUcgcaGUCuuUCCCACcGuGGCCg -3'
miRNA:   3'- gGGaCUCCGA----CAG--AGGGUGuCuCCGG- -5'
27176 5' -58.6 NC_005832.1 + 93732 0.67 0.680319
Target:  5'- gCCCUGAGcaUGaucgCUCCCGCuagcacgGGAGGCg -3'
miRNA:   3'- -GGGACUCcgACa---GAGGGUG-------UCUCCGg -5'
27176 5' -58.6 NC_005832.1 + 43108 0.67 0.671154
Target:  5'- gCCgagGGGGUgggGuUCUCCCugGagacacccaggGAGGCCg -3'
miRNA:   3'- gGGa--CUCCGa--C-AGAGGGugU-----------CUCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.