miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27225 5' -62.2 NC_005832.1 + 80688 0.66 0.529847
Target:  5'- cGAGGACCCcGuCCccuccaGGGC-CCUGGAg -3'
miRNA:   3'- uCUCCUGGGaCcGG------UCCGaGGACCUg -5'
27225 5' -62.2 NC_005832.1 + 80570 0.66 0.529847
Target:  5'- cGGGGGCaaucagGGagauuaCGGGCaUCCUGGACg -3'
miRNA:   3'- uCUCCUGgga---CCg-----GUCCG-AGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 7516 0.66 0.523968
Target:  5'- uGAGGGaCCUGGUggggugcucguucguCAGGagggacCUCCUGGACc -3'
miRNA:   3'- uCUCCUgGGACCG---------------GUCC------GAGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 32326 0.66 0.520062
Target:  5'- aGGGGGAUCCUuG-UGGGCUCC-GGACc -3'
miRNA:   3'- -UCUCCUGGGAcCgGUCCGAGGaCCUG- -5'
27225 5' -62.2 NC_005832.1 + 9925 0.66 0.520062
Target:  5'- aAGcGGGCaggGGaCCGGGCUCCacGGACa -3'
miRNA:   3'- -UCuCCUGggaCC-GGUCCGAGGa-CCUG- -5'
27225 5' -62.2 NC_005832.1 + 41544 0.66 0.520062
Target:  5'- gGGAGGcGCCCUcGGUaguCAuGCcCCUGGACa -3'
miRNA:   3'- -UCUCC-UGGGA-CCG---GUcCGaGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 72575 0.66 0.500711
Target:  5'- uGGGGcCCCUGGgcuUCAGGgUCCcgacgucguagUGGACg -3'
miRNA:   3'- uCUCCuGGGACC---GGUCCgAGG-----------ACCUG- -5'
27225 5' -62.2 NC_005832.1 + 87623 0.66 0.500711
Target:  5'- uGGAGGacgcuGCCCUGGuCCucGCguccaUCCUGGAg -3'
miRNA:   3'- -UCUCC-----UGGGACC-GGucCG-----AGGACCUg -5'
27225 5' -62.2 NC_005832.1 + 78098 0.66 0.499752
Target:  5'- -cAGGACCCUgucucccGGuagcucucCCAGGUUCCUGGcCu -3'
miRNA:   3'- ucUCCUGGGA-------CC--------GGUCCGAGGACCuG- -5'
27225 5' -62.2 NC_005832.1 + 75950 0.66 0.491155
Target:  5'- aAGGGGAUCCUGuGCuuuugCAGGUaCCUGGcCc -3'
miRNA:   3'- -UCUCCUGGGAC-CG-----GUCCGaGGACCuG- -5'
27225 5' -62.2 NC_005832.1 + 10746 0.66 0.491155
Target:  5'- aGGAGGA---UGGCCGGGCagaaCCUGGcCg -3'
miRNA:   3'- -UCUCCUgggACCGGUCCGa---GGACCuG- -5'
27225 5' -62.2 NC_005832.1 + 43174 0.67 0.472304
Target:  5'- -aAGGGCCU--GCCGGGCUUCUuugaGGGCg -3'
miRNA:   3'- ucUCCUGGGacCGGUCCGAGGA----CCUG- -5'
27225 5' -62.2 NC_005832.1 + 80820 0.67 0.472304
Target:  5'- -cAGGGCCCUGGaggggaCGGGgUCCUcguagacgggaGGACc -3'
miRNA:   3'- ucUCCUGGGACCg-----GUCCgAGGA-----------CCUG- -5'
27225 5' -62.2 NC_005832.1 + 36265 0.67 0.462092
Target:  5'- gAGAGGACCCUcGCgGcGGCcUCUgcgacuaUGGACg -3'
miRNA:   3'- -UCUCCUGGGAcCGgU-CCG-AGG-------ACCUG- -5'
27225 5' -62.2 NC_005832.1 + 96619 0.67 0.453825
Target:  5'- -cAGGuCCCUGGCugaccuggaCAGGCUCUUGaGAa -3'
miRNA:   3'- ucUCCuGGGACCG---------GUCCGAGGAC-CUg -5'
27225 5' -62.2 NC_005832.1 + 90305 0.67 0.453825
Target:  5'- cGAGGACUUuaaggguccagUGGCCAaGCUCUUGG-Ca -3'
miRNA:   3'- uCUCCUGGG-----------ACCGGUcCGAGGACCuG- -5'
27225 5' -62.2 NC_005832.1 + 31005 0.67 0.444733
Target:  5'- --cGGACCCUGGgaaaggaaAGGUUCC-GGACa -3'
miRNA:   3'- ucuCCUGGGACCgg------UCCGAGGaCCUG- -5'
27225 5' -62.2 NC_005832.1 + 103956 0.67 0.444733
Target:  5'- cGGGGACUaa--CCAGGcCUCCUGGAa -3'
miRNA:   3'- uCUCCUGGgaccGGUCC-GAGGACCUg -5'
27225 5' -62.2 NC_005832.1 + 90787 0.67 0.435745
Target:  5'- gAGGGGcccGCCCUcGGCCgagaugAGGCUCCgaGGuCg -3'
miRNA:   3'- -UCUCC---UGGGA-CCGG------UCCGAGGa-CCuG- -5'
27225 5' -62.2 NC_005832.1 + 97175 0.67 0.433069
Target:  5'- --uGGAcuCCCUGGaCgucaagaagcucgaCAGGCUCCUGGAg -3'
miRNA:   3'- ucuCCU--GGGACC-G--------------GUCCGAGGACCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.