miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2723 5' -59.8 NC_001491.2 + 21204 0.66 0.786396
Target:  5'- aACCgUUCCGguguuugcgccCCCGCuGUCa--ACCCCCCc -3'
miRNA:   3'- -UGG-AAGGU-----------GGGUG-CAGgugUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 103865 0.66 0.786396
Target:  5'- cACUgcgUCUuuCCCGCGUCCugGUCCCUg -3'
miRNA:   3'- -UGGa--AGGu-GGGUGCAGGugUGGGGGg -5'
2723 5' -59.8 NC_001491.2 + 147560 0.66 0.777446
Target:  5'- cGCCUgaaUCCGCCCcgACgGUCgGgGCCCUCg -3'
miRNA:   3'- -UGGA---AGGUGGG--UG-CAGgUgUGGGGGg -5'
2723 5' -59.8 NC_001491.2 + 3145 0.66 0.777446
Target:  5'- uGCCcgggCCGCCCgACGUCCggagcgauucGCACCUCa- -3'
miRNA:   3'- -UGGaa--GGUGGG-UGCAGG----------UGUGGGGgg -5'
2723 5' -59.8 NC_001491.2 + 102480 0.66 0.776544
Target:  5'- cCCUcgcagcgUCUAUCCACgGUCCcucUACUCCCCg -3'
miRNA:   3'- uGGA-------AGGUGGGUG-CAGGu--GUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 123017 0.66 0.772016
Target:  5'- cGCCgcggugUCCgugcuggucggguauAgCC-CGUCCGCGCCCgCCCc -3'
miRNA:   3'- -UGGa-----AGG---------------UgGGuGCAGGUGUGGG-GGG- -5'
2723 5' -59.8 NC_001491.2 + 143055 0.66 0.768373
Target:  5'- cGCCggccCCACCCcaucgACGUaacaCgGCGCCCCUCc -3'
miRNA:   3'- -UGGaa--GGUGGG-----UGCA----GgUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 83262 0.66 0.768373
Target:  5'- aGCCUcCCGCCaaccaGCGaugcguuuUCCAguCUCCCCg -3'
miRNA:   3'- -UGGAaGGUGGg----UGC--------AGGUguGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 116082 0.66 0.768373
Target:  5'- cCCcUCguCCCACucCCAguCCCCCCa -3'
miRNA:   3'- uGGaAGguGGGUGcaGGUguGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 105687 0.66 0.76746
Target:  5'- gACC-UCCAUCUugaucuuGCGUCUGguCCCCCUc -3'
miRNA:   3'- -UGGaAGGUGGG-------UGCAGGUguGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 128771 0.66 0.762875
Target:  5'- aGCUga-CugUCACaGUCCuggaugccguucgacGCACCCCCCg -3'
miRNA:   3'- -UGGaagGugGGUG-CAGG---------------UGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 22648 0.66 0.749895
Target:  5'- aACCagCgCACCCcauuuuCGggUACGCCCCCCg -3'
miRNA:   3'- -UGGaaG-GUGGGu-----GCagGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 140422 0.66 0.747088
Target:  5'- cGCCagCaggcguguguguguuCCCGCGauUCCACGCCCCgCCg -3'
miRNA:   3'- -UGGaaGgu-------------GGGUGC--AGGUGUGGGG-GG- -5'
2723 5' -59.8 NC_001491.2 + 117276 0.66 0.740506
Target:  5'- uCCUggCCGCCuCGCG-CUACGCCgaggcgcaggCCCCa -3'
miRNA:   3'- uGGAa-GGUGG-GUGCaGGUGUGG----------GGGG- -5'
2723 5' -59.8 NC_001491.2 + 117391 0.67 0.731029
Target:  5'- -gCUUCuCACCC-CGUCCGgggACCCCUg -3'
miRNA:   3'- ugGAAG-GUGGGuGCAGGUg--UGGGGGg -5'
2723 5' -59.8 NC_001491.2 + 36767 0.67 0.731029
Target:  5'- aGCCUaucaCUACCaCAuCGgCCugaGCGCCCCCCg -3'
miRNA:   3'- -UGGAa---GGUGG-GU-GCaGG---UGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 125312 0.67 0.731029
Target:  5'- cGCCUUUaCACCCACcaCCGCcuaGCCCUgCa -3'
miRNA:   3'- -UGGAAG-GUGGGUGcaGGUG---UGGGGgG- -5'
2723 5' -59.8 NC_001491.2 + 120243 0.67 0.72243
Target:  5'- uACCgggcaucUCCcCCCACacagcugucucaagCCACGCCCCCUc -3'
miRNA:   3'- -UGGa------AGGuGGGUGca------------GGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 85721 0.67 0.720511
Target:  5'- gGCCUgcgCCGCCaCACGUCuCugGgggugucUCCUCCg -3'
miRNA:   3'- -UGGAa--GGUGG-GUGCAG-GugU-------GGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 109335 0.67 0.711841
Target:  5'- uACCUUUUACCUAUccgcgGUCCGCugCCaaagaCCu -3'
miRNA:   3'- -UGGAAGGUGGGUG-----CAGGUGugGGg----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.