miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27230 5' -57 NC_005832.1 + 41612 0.66 0.839363
Target:  5'- -uGACGACGGGGuCGACGGaGucgauucagucaACCAGg -3'
miRNA:   3'- acCUGCUGCUCCuGCUGCUcC------------UGGUC- -5'
27230 5' -57 NC_005832.1 + 79891 0.66 0.836895
Target:  5'- aGGGCGGCcauGGccucggacccuucgGCGAUGGGGGCCu- -3'
miRNA:   3'- aCCUGCUGcu-CC--------------UGCUGCUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 94364 0.66 0.8226
Target:  5'- gGGA-GACG-GGugGACugcguGAGGACCu- -3'
miRNA:   3'- aCCUgCUGCuCCugCUG-----CUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 66992 0.66 0.80425
Target:  5'- aGGACGGCcAGGAcuuccaaacguccCGcuGCGAGGGCCc- -3'
miRNA:   3'- aCCUGCUGcUCCU-------------GC--UGCUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 80300 0.67 0.79617
Target:  5'- cGGAUG--GAGGcgucAUGACGGGGACgCAGg -3'
miRNA:   3'- aCCUGCugCUCC----UGCUGCUCCUG-GUC- -5'
27230 5' -57 NC_005832.1 + 10868 0.67 0.79617
Target:  5'- cGGccuGgGACcAGGACGcCGGGGACCGc -3'
miRNA:   3'- aCC---UgCUGcUCCUGCuGCUCCUGGUc -5'
27230 5' -57 NC_005832.1 + 80356 0.67 0.79617
Target:  5'- gUGGugGACaGGGugGG-GAaGGCCAGg -3'
miRNA:   3'- -ACCugCUGcUCCugCUgCUcCUGGUC- -5'
27230 5' -57 NC_005832.1 + 97218 0.67 0.79617
Target:  5'- aGGGCGucUGAGGuCGAC-AGGGCCu- -3'
miRNA:   3'- aCCUGCu-GCUCCuGCUGcUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 5761 0.67 0.78705
Target:  5'- cGuGACGAgGugucuGGugGACGGGGAUCc- -3'
miRNA:   3'- aC-CUGCUgCu----CCugCUGCUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 2662 0.67 0.78705
Target:  5'- aGGAgGGCcuguGGACuauGGCGAGGACCc- -3'
miRNA:   3'- aCCUgCUGcu--CCUG---CUGCUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 96229 0.67 0.786131
Target:  5'- aGGGCGAaccucacCGc-GACGuuGAGGACCAGu -3'
miRNA:   3'- aCCUGCU-------GCucCUGCugCUCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 37565 0.67 0.774987
Target:  5'- aGGACauuuacauaGcCGGGGugGGCGAGGccguagaguuugccACCAGu -3'
miRNA:   3'- aCCUG---------CuGCUCCugCUGCUCC--------------UGGUC- -5'
27230 5' -57 NC_005832.1 + 8126 0.67 0.774987
Target:  5'- aGGGCGGCcuucGAGGAgucccuagauauccUGACGGGaGCCGGg -3'
miRNA:   3'- aCCUGCUG----CUCCU--------------GCUGCUCcUGGUC- -5'
27230 5' -57 NC_005832.1 + 5413 0.67 0.774987
Target:  5'- -aGACGGCacccugGAGGugGACGAGGugggggugcccgaaGCCAu -3'
miRNA:   3'- acCUGCUG------CUCCugCUGCUCC--------------UGGUc -5'
27230 5' -57 NC_005832.1 + 67076 0.67 0.769345
Target:  5'- cUGGACGcCGAGGcccuggaggccacucCGuACGAGG-CCAGg -3'
miRNA:   3'- -ACCUGCuGCUCCu--------------GC-UGCUCCuGGUC- -5'
27230 5' -57 NC_005832.1 + 27599 0.67 0.7684
Target:  5'- gUGGACGAUGAGuacuccauaGACGGCcuGGGGgCAGu -3'
miRNA:   3'- -ACCUGCUGCUC---------CUGCUGc-UCCUgGUC- -5'
27230 5' -57 NC_005832.1 + 87485 0.67 0.7684
Target:  5'- aGGAU-----GGACG-CGAGGACCAGg -3'
miRNA:   3'- aCCUGcugcuCCUGCuGCUCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 71653 0.67 0.7684
Target:  5'- aGGGCcACGAGGGCGGCGgaagaguacuuaAGGAUa-- -3'
miRNA:   3'- aCCUGcUGCUCCUGCUGC------------UCCUGguc -5'
27230 5' -57 NC_005832.1 + 44034 0.67 0.753125
Target:  5'- gGaGACGACGGGGugauagacccguuguGCG-CGGGGGCCc- -3'
miRNA:   3'- aC-CUGCUGCUCC---------------UGCuGCUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 53397 0.67 0.749261
Target:  5'- aGGACGACGcuGuCGucaaGAGGGCCAc -3'
miRNA:   3'- aCCUGCUGCucCuGCug--CUCCUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.