miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27233 5' -49 NC_005832.1 + 65634 0.66 0.995619
Target:  5'- cCUGCCggcCUGGaaggaCAGGAAGGcccUGGCCg -3'
miRNA:   3'- -GACGGau-GACCg----GUUUUUCUu--GCUGG- -5'
27233 5' -49 NC_005832.1 + 75714 0.66 0.995619
Target:  5'- cCUGUCUGC-GGCCGu-GGGGAgGugUa -3'
miRNA:   3'- -GACGGAUGaCCGGUuuUUCUUgCugG- -5'
27233 5' -49 NC_005832.1 + 32102 0.66 0.995619
Target:  5'- aCUGCCUguGCggGGCCuGAAAGGccucgcgguggGCGcCCc -3'
miRNA:   3'- -GACGGA--UGa-CCGGuUUUUCU-----------UGCuGG- -5'
27233 5' -49 NC_005832.1 + 40837 0.66 0.995619
Target:  5'- --cCCUuuuCgGGUCGAGAGGGGCGACa -3'
miRNA:   3'- gacGGAu--GaCCGGUUUUUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 11036 0.66 0.995174
Target:  5'- -aGCCcgacgaGCUGGCCGAGAGGGucagggggagggugaGCuACCu -3'
miRNA:   3'- gaCGGa-----UGACCGGUUUUUCU---------------UGcUGG- -5'
27233 5' -49 NC_005832.1 + 66969 0.66 0.994857
Target:  5'- gCUGCCUGgUGucuuGCauccucAGGACGGCCa -3'
miRNA:   3'- -GACGGAUgAC----CGguuuu-UCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 41851 0.66 0.994857
Target:  5'- -aGCUcACcccggcgaUGGCCAGGAGGAcCGACg -3'
miRNA:   3'- gaCGGaUG--------ACCGGUUUUUCUuGCUGg -5'
27233 5' -49 NC_005832.1 + 48857 0.66 0.994857
Target:  5'- -cGCCcaa-GGCCGucGAGuGCGACCu -3'
miRNA:   3'- gaCGGaugaCCGGUuuUUCuUGCUGG- -5'
27233 5' -49 NC_005832.1 + 65797 0.66 0.994857
Target:  5'- -cGCCcgUGCUGGaucCCcuGAAGA-CGGCCa -3'
miRNA:   3'- gaCGG--AUGACC---GGuuUUUCUuGCUGG- -5'
27233 5' -49 NC_005832.1 + 74892 0.66 0.994775
Target:  5'- -gGCC--CUGGCCGAAAAGuacAGCGgaugcaaGCCg -3'
miRNA:   3'- gaCGGauGACCGGUUUUUC---UUGC-------UGG- -5'
27233 5' -49 NC_005832.1 + 84712 0.66 0.99435
Target:  5'- gUGCCcgGCccGGCCAAAuguuggaccagggcuAGGGACGagGCCa -3'
miRNA:   3'- gACGGa-UGa-CCGGUUU---------------UUCUUGC--UGG- -5'
27233 5' -49 NC_005832.1 + 27548 0.66 0.99435
Target:  5'- -aGCCUGCUcgaagacaccuucgaGGCCuuccuGGGAgcggugugcACGGCCg -3'
miRNA:   3'- gaCGGAUGA---------------CCGGuuu--UUCU---------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 87412 0.66 0.993991
Target:  5'- -gGCUg--UGGCCGAAGuGGAgGGCCa -3'
miRNA:   3'- gaCGGaugACCGGUUUUuCUUgCUGG- -5'
27233 5' -49 NC_005832.1 + 90044 0.66 0.993614
Target:  5'- -cGCCaACcccgagaUGGCCAGGcugggaggaggaguGAGGugGGCCg -3'
miRNA:   3'- gaCGGaUG-------ACCGGUUU--------------UUCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 94825 0.66 0.993012
Target:  5'- cCUGUCUA--GGCUAAAGucuGCGGCCu -3'
miRNA:   3'- -GACGGAUgaCCGGUUUUucuUGCUGG- -5'
27233 5' -49 NC_005832.1 + 36009 0.66 0.993012
Target:  5'- gUGCCUAgagGGCCu-----GACGGCCg -3'
miRNA:   3'- gACGGAUga-CCGGuuuuucUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 81287 0.66 0.991909
Target:  5'- -aGCCcucACUugGGCCA---AGAGCGGCUa -3'
miRNA:   3'- gaCGGa--UGA--CCGGUuuuUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 53061 0.66 0.991909
Target:  5'- -cGUCUGC-GGCCu-AGAGAugGucGCCg -3'
miRNA:   3'- gaCGGAUGaCCGGuuUUUCUugC--UGG- -5'
27233 5' -49 NC_005832.1 + 45795 0.66 0.991673
Target:  5'- gUGaCCggggaGCUGaGCCAucaccagcuuguAGAGGACGGCCa -3'
miRNA:   3'- gAC-GGa----UGAC-CGGUu-----------UUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 97276 0.67 0.989862
Target:  5'- -aGCCUGgccggccucgaggccCUGGUCGcaaAGAAGGACGAgCu -3'
miRNA:   3'- gaCGGAU---------------GACCGGU---UUUUCUUGCUgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.