miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27235 3' -51.8 NC_005832.1 + 93705 0.66 0.978896
Target:  5'- cUCUGAuGGgAUCCCCCAuGGaucuGUUUCUg -3'
miRNA:   3'- -GGGCU-UCgUAGGGGGUuUCg---CAAAGG- -5'
27235 3' -51.8 NC_005832.1 + 35045 0.66 0.978896
Target:  5'- cCCUGAGGCuGUCUCCCAcAGaGg--CCa -3'
miRNA:   3'- -GGGCUUCG-UAGGGGGUuUCgCaaaGG- -5'
27235 3' -51.8 NC_005832.1 + 67403 0.66 0.978896
Target:  5'- gUCGggGCGgaccuugacucUUUCCCAGAGUGgg-CCg -3'
miRNA:   3'- gGGCuuCGU-----------AGGGGGUUUCGCaaaGG- -5'
27235 3' -51.8 NC_005832.1 + 19884 0.66 0.978896
Target:  5'- cCUCGggGgGaaccugccUCCCCCAAAGCcccugggCCu -3'
miRNA:   3'- -GGGCuuCgU--------AGGGGGUUUCGcaaa---GG- -5'
27235 3' -51.8 NC_005832.1 + 19956 0.66 0.976434
Target:  5'- cCUCGggGCAUCUccagCCCGgacgucaugcAGGCGg-UCCu -3'
miRNA:   3'- -GGGCuuCGUAGG----GGGU----------UUCGCaaAGG- -5'
27235 3' -51.8 NC_005832.1 + 453 0.66 0.975656
Target:  5'- cUCCGggGU-UCUugauacagaaggagCCCAGGGCGgcgUCCu -3'
miRNA:   3'- -GGGCuuCGuAGG--------------GGGUUUCGCaa-AGG- -5'
27235 3' -51.8 NC_005832.1 + 98042 0.66 0.973768
Target:  5'- uCCCGAAG-GUCCUCa--GGCGUcggCCa -3'
miRNA:   3'- -GGGCUUCgUAGGGGguuUCGCAaa-GG- -5'
27235 3' -51.8 NC_005832.1 + 32036 0.66 0.973768
Target:  5'- -gCGAAGCGUCaaaCAuGGCGUUUUCu -3'
miRNA:   3'- ggGCUUCGUAGgggGUuUCGCAAAGG- -5'
27235 3' -51.8 NC_005832.1 + 90267 0.66 0.973768
Target:  5'- gCUCGAAGCAcucugcgagCCUCCuc-GCGUggUCCu -3'
miRNA:   3'- -GGGCUUCGUa--------GGGGGuuuCGCAa-AGG- -5'
27235 3' -51.8 NC_005832.1 + 44286 0.66 0.973768
Target:  5'- gCCCGccGGUAUCCa-CAGAGCGUcgcacagUCCc -3'
miRNA:   3'- -GGGCu-UCGUAGGggGUUUCGCAa------AGG- -5'
27235 3' -51.8 NC_005832.1 + 60305 0.66 0.97089
Target:  5'- gCCCGAGGguUCCacguCCGuGGUGg--CCg -3'
miRNA:   3'- -GGGCUUCguAGGg---GGUuUCGCaaaGG- -5'
27235 3' -51.8 NC_005832.1 + 67212 0.66 0.97089
Target:  5'- -aCGGAGUggCCUCCAGGGCcucggcgUCCa -3'
miRNA:   3'- ggGCUUCGuaGGGGGUUUCGcaa----AGG- -5'
27235 3' -51.8 NC_005832.1 + 47425 0.66 0.97089
Target:  5'- gCCCaGGAGCGUCCCggccaCAAAGUccagCCu -3'
miRNA:   3'- -GGG-CUUCGUAGGGg----GUUUCGcaaaGG- -5'
27235 3' -51.8 NC_005832.1 + 6448 0.66 0.967792
Target:  5'- cCCCGccGCGUCCCCUccguucucGAGGCa----- -3'
miRNA:   3'- -GGGCuuCGUAGGGGG--------UUUCGcaaagg -5'
27235 3' -51.8 NC_005832.1 + 10740 0.66 0.967792
Target:  5'- cCCCGgcGUccugGUCCCaggCCGAGGCGUa--- -3'
miRNA:   3'- -GGGCuuCG----UAGGG---GGUUUCGCAaagg -5'
27235 3' -51.8 NC_005832.1 + 10682 0.66 0.967792
Target:  5'- cCUCGu--CAUCCCCCAAGaCGUUcgCCu -3'
miRNA:   3'- -GGGCuucGUAGGGGGUUUcGCAAa-GG- -5'
27235 3' -51.8 NC_005832.1 + 7547 0.66 0.964467
Target:  5'- gCCCaGGAGC-UCCCCgAGGgcacggaccccGCGUcgUCCa -3'
miRNA:   3'- -GGG-CUUCGuAGGGGgUUU-----------CGCAa-AGG- -5'
27235 3' -51.8 NC_005832.1 + 47120 0.67 0.960909
Target:  5'- aCUGGAGgGUCcuggCCCCAGGGCacucgcUUUCCg -3'
miRNA:   3'- gGGCUUCgUAG----GGGGUUUCGc-----AAAGG- -5'
27235 3' -51.8 NC_005832.1 + 1738 0.67 0.957112
Target:  5'- gUCCGAGGCGUaCCUCCu--GUGg-UCCu -3'
miRNA:   3'- -GGGCUUCGUA-GGGGGuuuCGCaaAGG- -5'
27235 3' -51.8 NC_005832.1 + 99538 0.67 0.956719
Target:  5'- aCCGcuGGCAUCuCCUCGcccgucuuuaagcAGGCGUacUUCCa -3'
miRNA:   3'- gGGCu-UCGUAG-GGGGU-------------UUCGCA--AAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.