miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27418 5' -56.7 NC_005869.1 + 2051 0.66 0.528845
Target:  5'- gGCCGgAUCUggUUUAGaucGCCGCCgGC-CCg -3'
miRNA:   3'- -CGGCgUAGA--AGGUC---UGGCGGgUGuGG- -5'
27418 5' -56.7 NC_005869.1 + 25854 0.66 0.528845
Target:  5'- cGCCuGC-UCUUCacccaGGGCCGCUgcCACCu -3'
miRNA:   3'- -CGG-CGuAGAAGg----UCUGGCGGguGUGG- -5'
27418 5' -56.7 NC_005869.1 + 16601 0.66 0.528845
Target:  5'- cGCCGCGggcgCCGGGCCaCCgGaacCACCg -3'
miRNA:   3'- -CGGCGUagaaGGUCUGGcGGgU---GUGG- -5'
27418 5' -56.7 NC_005869.1 + 30333 0.66 0.528845
Target:  5'- gGCCGCc---UCCgAGGCCgugGCCCGCAgCu -3'
miRNA:   3'- -CGGCGuagaAGG-UCUGG---CGGGUGUgG- -5'
27418 5' -56.7 NC_005869.1 + 15339 0.66 0.518065
Target:  5'- gGCCGaCGUggUCaacgcGAUCGCCgGCGCCa -3'
miRNA:   3'- -CGGC-GUAgaAGgu---CUGGCGGgUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 23768 0.66 0.514848
Target:  5'- cCC-CAUCUUCgcccuuccuccucgCGGGCCGCgCCGuCGCCg -3'
miRNA:   3'- cGGcGUAGAAG--------------GUCUGGCG-GGU-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 29602 0.66 0.501004
Target:  5'- cGCCGCGaccagagcggcaacaUCUccaaccucaagaUCCAGGCCaaguaCCACAUCa -3'
miRNA:   3'- -CGGCGU---------------AGA------------AGGUCUGGcg---GGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 28603 0.66 0.496778
Target:  5'- cCCGCcgCUgCC--ACCGCCCcuCACCu -3'
miRNA:   3'- cGGCGuaGAaGGucUGGCGGGu-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 23613 0.66 0.496778
Target:  5'- cCCGguUCUUUuugaCAGAgCGCCCucgacuGCGCCc -3'
miRNA:   3'- cGGCguAGAAG----GUCUgGCGGG------UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 18045 0.66 0.486282
Target:  5'- cGCCGCcccgUCCAGcggcGCCuggggcgcguGCCCAgCACCa -3'
miRNA:   3'- -CGGCGuagaAGGUC----UGG----------CGGGU-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 17491 0.66 0.486282
Target:  5'- cCCGCG-CgcgCCGcGugCGCCuCGCGCCc -3'
miRNA:   3'- cGGCGUaGaa-GGU-CugGCGG-GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 31439 0.66 0.486282
Target:  5'- cGCCGCcagcuUCagCCAGuGCCGCaaGCGCUg -3'
miRNA:   3'- -CGGCGu----AGaaGGUC-UGGCGggUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 23321 0.66 0.486282
Target:  5'- gGCCGCcgCgcCCGacaGCCGCgCCAgGCCc -3'
miRNA:   3'- -CGGCGuaGaaGGUc--UGGCG-GGUgUGG- -5'
27418 5' -56.7 NC_005869.1 + 6500 0.66 0.485239
Target:  5'- cGCCGCGgaggggcUCguuggUCCAGcagaggcgGCCGCCCuuGCg -3'
miRNA:   3'- -CGGCGU-------AGa----AGGUC--------UGGCGGGugUGg -5'
27418 5' -56.7 NC_005869.1 + 23437 0.67 0.475893
Target:  5'- --gGCGUCUUCagacccGCCGCCUuCACCa -3'
miRNA:   3'- cggCGUAGAAGguc---UGGCGGGuGUGG- -5'
27418 5' -56.7 NC_005869.1 + 27167 0.67 0.475893
Target:  5'- cGCCGCAccUCggCCGaACCuCCuCGCGCCc -3'
miRNA:   3'- -CGGCGU--AGaaGGUcUGGcGG-GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 22822 0.67 0.475893
Target:  5'- aGCCaGCggCUcUCGGGCgCGCCCAgGCUc -3'
miRNA:   3'- -CGG-CGuaGAaGGUCUG-GCGGGUgUGG- -5'
27418 5' -56.7 NC_005869.1 + 29321 0.67 0.465616
Target:  5'- cCCuaAUCccCCAGACCGCCacccuCAUGCCa -3'
miRNA:   3'- cGGcgUAGaaGGUCUGGCGG-----GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 27365 0.67 0.465616
Target:  5'- aCCGCGc---CCuGGCCGCCCGcCGCUg -3'
miRNA:   3'- cGGCGUagaaGGuCUGGCGGGU-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 14788 0.67 0.465616
Target:  5'- uGCCGCugcgCUcCCGGGCCuucuacaacaCCCAgGCCg -3'
miRNA:   3'- -CGGCGua--GAaGGUCUGGc---------GGGUgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.