miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27420 5' -50.7 NC_005869.1 + 4964 0.66 0.832152
Target:  5'- aGCGGCAGguGccAGccGggG-UGAGGAg -3'
miRNA:   3'- -CGUCGUCguCu-UCuuCuuCuGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 15549 0.66 0.832152
Target:  5'- gGCGGCGGUGGAAGcGGu-GGCGcgccGGAg -3'
miRNA:   3'- -CGUCGUCGUCUUCuUCuuCUGCu---CCU- -5'
27420 5' -50.7 NC_005869.1 + 6980 0.66 0.831186
Target:  5'- -aGGCGGCuGggGAAGGccggccugcguguGGACGaAGGc -3'
miRNA:   3'- cgUCGUCGuCuuCUUCU-------------UCUGC-UCCu -5'
27420 5' -50.7 NC_005869.1 + 21399 0.66 0.829246
Target:  5'- cCGGCAGCcgccgcugccgguuGGucAGGAAGAAGuuGAGGGu -3'
miRNA:   3'- cGUCGUCG--------------UC--UUCUUCUUCugCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 3060 0.66 0.822382
Target:  5'- -aAGCGGCGGGAGGAGAacacauacAGAaacauGGAg -3'
miRNA:   3'- cgUCGUCGUCUUCUUCU--------UCUgcu--CCU- -5'
27420 5' -50.7 NC_005869.1 + 9050 0.66 0.819405
Target:  5'- gGUGGCGaugugcucGCAGAGGAAGAAGuuuaugacccagcgGCGcAGGGu -3'
miRNA:   3'- -CGUCGU--------CGUCUUCUUCUUC--------------UGC-UCCU- -5'
27420 5' -50.7 NC_005869.1 + 10193 0.66 0.81238
Target:  5'- aGguGgGGCGGAGGGuAGAGGuaGAGGGg -3'
miRNA:   3'- -CguCgUCGUCUUCU-UCUUCugCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 8001 0.66 0.81238
Target:  5'- gGCGGguGCccucGggGGAGccGAUGGGGc -3'
miRNA:   3'- -CGUCguCGu---CuuCUUCuuCUGCUCCu -5'
27420 5' -50.7 NC_005869.1 + 8301 0.66 0.81238
Target:  5'- uGCAGCGGCAGuagcacucaAAGAggcccucgccGGAGGuguccucgGCGAGGu -3'
miRNA:   3'- -CGUCGUCGUC---------UUCU----------UCUUC--------UGCUCCu -5'
27420 5' -50.7 NC_005869.1 + 16557 0.66 0.802159
Target:  5'- cGCGGCGcgcGCGGGgcuGGAGggGcUGGGGGa -3'
miRNA:   3'- -CGUCGU---CGUCUu--CUUCuuCuGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 10231 0.66 0.802159
Target:  5'- cGUGGCcgguuGGCGGggGGAGAGGuucaugagcAUGAGGc -3'
miRNA:   3'- -CGUCG-----UCGUCuuCUUCUUC---------UGCUCCu -5'
27420 5' -50.7 NC_005869.1 + 6909 0.66 0.802159
Target:  5'- gGC-GCGGUAGAGGAGcugcuuGAAGAUGgcguGGGAg -3'
miRNA:   3'- -CGuCGUCGUCUUCUU------CUUCUGC----UCCU- -5'
27420 5' -50.7 NC_005869.1 + 20728 0.66 0.791732
Target:  5'- gGCGGCGGCGGccGgcGgcGGCGccuGGGu -3'
miRNA:   3'- -CGUCGUCGUCuuCuuCuuCUGCu--CCU- -5'
27420 5' -50.7 NC_005869.1 + 3780 0.66 0.791732
Target:  5'- cGCuGgAGCgaacaccauggaAGAGGAGGAGGAUGAGa- -3'
miRNA:   3'- -CGuCgUCG------------UCUUCUUCUUCUGCUCcu -5'
27420 5' -50.7 NC_005869.1 + 8949 0.67 0.781111
Target:  5'- cGCGGgAGguGAGGAAGGugugcaugcAGugGAGu- -3'
miRNA:   3'- -CGUCgUCguCUUCUUCU---------UCugCUCcu -5'
27420 5' -50.7 NC_005869.1 + 5430 0.67 0.781111
Target:  5'- gGUAGCacuGGCGGAGGAGGucauAGGaGAGGu -3'
miRNA:   3'- -CGUCG---UCGUCUUCUUCu---UCUgCUCCu -5'
27420 5' -50.7 NC_005869.1 + 7483 0.67 0.770312
Target:  5'- aGguGCGGguGAccaGGAAGGAGG-GGGGc -3'
miRNA:   3'- -CguCGUCguCU---UCUUCUUCUgCUCCu -5'
27420 5' -50.7 NC_005869.1 + 5503 0.67 0.770312
Target:  5'- gGCGGaccauGGCGGuGAGcAGGAGGAUGAGGc -3'
miRNA:   3'- -CGUCg----UCGUC-UUC-UUCUUCUGCUCCu -5'
27420 5' -50.7 NC_005869.1 + 7891 0.67 0.769222
Target:  5'- cCAGCAGCuccucgucccccgAGAGGuGGAAGACcagcAGGAa -3'
miRNA:   3'- cGUCGUCG-------------UCUUCuUCUUCUGc---UCCU- -5'
27420 5' -50.7 NC_005869.1 + 1576 0.67 0.759347
Target:  5'- gGUAGUAGCAGAGGccAGGAGGCaGuacGGGc -3'
miRNA:   3'- -CGUCGUCGUCUUCu-UCUUCUG-Cu--CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.