miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27456 3' -55.9 NC_005869.1 + 28332 0.66 0.583432
Target:  5'- aCUACCGCcGCUACGuGCUg--GCcACCg -3'
miRNA:   3'- -GGUGGCGuUGAUGC-CGGacgCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 14014 0.66 0.583432
Target:  5'- cCCAgCGCGagcGCUcauccagguugAUGGUCUGCGUgcucGCCu -3'
miRNA:   3'- -GGUgGCGU---UGA-----------UGCCGGACGCGa---UGG- -5'
27456 3' -55.9 NC_005869.1 + 33626 0.66 0.572275
Target:  5'- aCgACCGacuGCUGCuGGCCgcgGUGCUgacuguucucGCCg -3'
miRNA:   3'- -GgUGGCgu-UGAUG-CCGGa--CGCGA----------UGG- -5'
27456 3' -55.9 NC_005869.1 + 1725 0.66 0.572275
Target:  5'- gCACCGUAGCUAgugUGGCuCUG-GuCUGCUu -3'
miRNA:   3'- gGUGGCGUUGAU---GCCG-GACgC-GAUGG- -5'
27456 3' -55.9 NC_005869.1 + 33714 0.66 0.572275
Target:  5'- aCACCGCGA--GCgGGCCgGUGauaUACCc -3'
miRNA:   3'- gGUGGCGUUgaUG-CCGGaCGCg--AUGG- -5'
27456 3' -55.9 NC_005869.1 + 10730 0.66 0.572275
Target:  5'- gCgGCCGCGucaGCgACGGCgaGgGCgACCg -3'
miRNA:   3'- -GgUGGCGU---UGaUGCCGgaCgCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 9547 0.66 0.565604
Target:  5'- gCGCUGCGcgggggcgccuucgaGCUGCGGCCccgggaGgGCgGCCg -3'
miRNA:   3'- gGUGGCGU---------------UGAUGCCGGa-----CgCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 7686 0.66 0.565604
Target:  5'- uCCugCGcCAGCUcgGCgaggucuggguugugGGCCagcagGUGCUGCCa -3'
miRNA:   3'- -GGugGC-GUUGA--UG---------------CCGGa----CGCGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 7445 0.66 0.561168
Target:  5'- gCGCCGCGACUacGCGGaCUgggaggaggGCGUcaugGCCc -3'
miRNA:   3'- gGUGGCGUUGA--UGCC-GGa--------CGCGa---UGG- -5'
27456 3' -55.9 NC_005869.1 + 8462 0.66 0.561168
Target:  5'- aCCACCGCcACUG-GGaCaGCGCccugGCCa -3'
miRNA:   3'- -GGUGGCGuUGAUgCCgGaCGCGa---UGG- -5'
27456 3' -55.9 NC_005869.1 + 10773 0.66 0.550122
Target:  5'- gCCGCCGCGcCcgACaGCC-GCGCcagGCCc -3'
miRNA:   3'- -GGUGGCGUuGa-UGcCGGaCGCGa--UGG- -5'
27456 3' -55.9 NC_005869.1 + 8574 0.66 0.550122
Target:  5'- gCCGCCGCcGCcgaGGCC-GCGgagGCCg -3'
miRNA:   3'- -GGUGGCGuUGaugCCGGaCGCga-UGG- -5'
27456 3' -55.9 NC_005869.1 + 9963 0.66 0.550122
Target:  5'- cCCugCGgGGCUACGGUCgcacccaccugGaCGCcgACCg -3'
miRNA:   3'- -GGugGCgUUGAUGCCGGa----------C-GCGa-UGG- -5'
27456 3' -55.9 NC_005869.1 + 11954 0.66 0.550122
Target:  5'- aCCACCGCcuCcaggAUGGCCccgaUGCGgUugGCCa -3'
miRNA:   3'- -GGUGGCGuuGa---UGCCGG----ACGCgA--UGG- -5'
27456 3' -55.9 NC_005869.1 + 26778 0.66 0.550122
Target:  5'- -gGCCGCAGCaGCGGCg-GCaGCagaACCa -3'
miRNA:   3'- ggUGGCGUUGaUGCCGgaCG-CGa--UGG- -5'
27456 3' -55.9 NC_005869.1 + 3608 0.66 0.539144
Target:  5'- gCCGCCGUccccGGCUGCuGCUguUGCUGCUg -3'
miRNA:   3'- -GGUGGCG----UUGAUGcCGGacGCGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 18400 0.66 0.528241
Target:  5'- uCCACgGCGugggagACGGCCUG-GUUgGCCa -3'
miRNA:   3'- -GGUGgCGUuga---UGCCGGACgCGA-UGG- -5'
27456 3' -55.9 NC_005869.1 + 11146 0.66 0.528241
Target:  5'- aCCG-CGCAGCUGCuGCUgaucGCGCagcacUGCCg -3'
miRNA:   3'- -GGUgGCGUUGAUGcCGGa---CGCG-----AUGG- -5'
27456 3' -55.9 NC_005869.1 + 15584 0.66 0.528241
Target:  5'- gCACC-CGGCgGCGGCgCagGCGCUccgcGCCg -3'
miRNA:   3'- gGUGGcGUUGaUGCCG-Ga-CGCGA----UGG- -5'
27456 3' -55.9 NC_005869.1 + 21031 0.66 0.528241
Target:  5'- cCCAgCCGCAACUG-GGCCgccuucCGCgGCUg -3'
miRNA:   3'- -GGU-GGCGUUGAUgCCGGac----GCGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.