miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27456 5' -55.2 NC_005869.1 + 17553 0.66 0.542972
Target:  5'- gGGGCGcgaggcgcacGCGGCgCGCgcgggGCUGgAGGggCu -3'
miRNA:   3'- aCCCGU----------UGCCG-GCGa----UGACgUUCaaG- -5'
27456 5' -55.2 NC_005869.1 + 3002 0.66 0.542972
Target:  5'- gGGGCugaagcugcccaGGCGGCCGCccacaaacauggUGCUGCGgAGg-- -3'
miRNA:   3'- aCCCG------------UUGCCGGCG------------AUGACGU-UCaag -5'
27456 5' -55.2 NC_005869.1 + 17161 0.66 0.509546
Target:  5'- cGGGCGGgGGgCGC--CUGCAGGa-- -3'
miRNA:   3'- aCCCGUUgCCgGCGauGACGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 21224 0.67 0.498593
Target:  5'- cGGGCAAUGaCCGC--CUGCucacucccaacGAGUUCg -3'
miRNA:   3'- aCCCGUUGCcGGCGauGACG-----------UUCAAG- -5'
27456 5' -55.2 NC_005869.1 + 24478 0.67 0.498593
Target:  5'- aGGGCGccucgGCGGCCuccGCgGCUGCGccgGGggCg -3'
miRNA:   3'- aCCCGU-----UGCCGG---CGaUGACGU---UCaaG- -5'
27456 5' -55.2 NC_005869.1 + 12141 0.67 0.498593
Target:  5'- cUGGGCAGCcuGGCCGC-GCUGaaugccUUCa -3'
miRNA:   3'- -ACCCGUUG--CCGGCGaUGACguuc--AAG- -5'
27456 5' -55.2 NC_005869.1 + 8113 0.67 0.487747
Target:  5'- gUGGGCGgucuggaagauGCGGCCGCagUGCUcGCAc-UUCu -3'
miRNA:   3'- -ACCCGU-----------UGCCGGCG--AUGA-CGUucAAG- -5'
27456 5' -55.2 NC_005869.1 + 3653 0.67 0.487747
Target:  5'- cGGaGCuGCGGCaGCaGCUGCAGGa-- -3'
miRNA:   3'- aCC-CGuUGCCGgCGaUGACGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 5872 0.67 0.477013
Target:  5'- gGGGUAGCGGUCGUUgggcACUaaugGCGAGg-- -3'
miRNA:   3'- aCCCGUUGCCGGCGA----UGA----CGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 9897 0.67 0.466398
Target:  5'- aGGaGCAGCucaaggacaucGGCCGCUGCcaGCAGGa-- -3'
miRNA:   3'- aCC-CGUUG-----------CCGGCGAUGa-CGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 18795 0.67 0.455906
Target:  5'- gGGGCGGCGGCgGCaGCggaGgAGGUg- -3'
miRNA:   3'- aCCCGUUGCCGgCGaUGa--CgUUCAag -5'
27456 5' -55.2 NC_005869.1 + 6208 0.67 0.445542
Target:  5'- cGGGCGAUGGCuuCGgUGgUGCGGGcgUCc -3'
miRNA:   3'- aCCCGUUGCCG--GCgAUgACGUUCa-AG- -5'
27456 5' -55.2 NC_005869.1 + 19258 0.68 0.425218
Target:  5'- --cGCAGCGGCUGCaGCUGCGc-UUCg -3'
miRNA:   3'- accCGUUGCCGGCGaUGACGUucAAG- -5'
27456 5' -55.2 NC_005869.1 + 26844 0.68 0.405458
Target:  5'- gUGGGCugguucugcuGCcGCCGCUGCUGCGGc--- -3'
miRNA:   3'- -ACCCGu---------UGcCGGCGAUGACGUUcaag -5'
27456 5' -55.2 NC_005869.1 + 26255 0.69 0.386285
Target:  5'- gGcGGCggUGGCUcgGCUGCUGCuGGUg- -3'
miRNA:   3'- aC-CCGuuGCCGG--CGAUGACGuUCAag -5'
27456 5' -55.2 NC_005869.1 + 11728 0.69 0.376926
Target:  5'- gGGGCGGCGGCgGCggggGUGAGcgCg -3'
miRNA:   3'- aCCCGUUGCCGgCGaugaCGUUCaaG- -5'
27456 5' -55.2 NC_005869.1 + 12585 0.69 0.358671
Target:  5'- uUGGGCGACGaggacgacGCgGCgcgGCUGCAGGc-- -3'
miRNA:   3'- -ACCCGUUGC--------CGgCGa--UGACGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 21770 0.69 0.358671
Target:  5'- aGGGCGugGGCCGaguugGCguagaGgAGGUUCu -3'
miRNA:   3'- aCCCGUugCCGGCga---UGa----CgUUCAAG- -5'
27456 5' -55.2 NC_005869.1 + 18616 0.69 0.358671
Target:  5'- cUGGGCGGCGGCgggCGCUug-GCGGGa-- -3'
miRNA:   3'- -ACCCGUUGCCG---GCGAugaCGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 6863 0.69 0.358671
Target:  5'- cUGcGCGGCGGCCGCUGCUacccCAAcUUCa -3'
miRNA:   3'- -ACcCGUUGCCGGCGAUGAc---GUUcAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.