miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27462 5' -63.1 NC_005869.1 + 7938 0.66 0.243783
Target:  5'- aCgAGCUGCuuuccgaAGCGGCCGuGCCAg- -3'
miRNA:   3'- -GgUCGACGucg----UCGCCGGCcCGGUgg -5'
27462 5' -63.1 NC_005869.1 + 7719 0.66 0.241917
Target:  5'- gCCAGCaGguGCugccagagggugucGGUGaGgCGGGCCugCa -3'
miRNA:   3'- -GGUCGaCguCG--------------UCGC-CgGCCCGGugG- -5'
27462 5' -63.1 NC_005869.1 + 15335 0.66 0.23761
Target:  5'- -gAGCgGCGGCGGgGGgCgcaucuuauuguGGGCCACg -3'
miRNA:   3'- ggUCGaCGUCGUCgCCgG------------CCCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 8182 0.66 0.23761
Target:  5'- -gGGCgGUGGCAGgGuGCCgucgggcuugggGGGCCGCUg -3'
miRNA:   3'- ggUCGaCGUCGUCgC-CGG------------CCCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 6802 0.66 0.23761
Target:  5'- -aAGUugggGUAGCAGCGGCC--GCCGCg -3'
miRNA:   3'- ggUCGa---CGUCGUCGCCGGccCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 30389 0.66 0.23761
Target:  5'- gCAGCUGCugccGCAGCuccGCCaGcGCCuGCCg -3'
miRNA:   3'- gGUCGACGu---CGUCGc--CGGcC-CGG-UGG- -5'
27462 5' -63.1 NC_005869.1 + 17486 0.66 0.231569
Target:  5'- gCGGCgugGguGCuggAGCGGgCGGcuCCACCa -3'
miRNA:   3'- gGUCGa--CguCG---UCGCCgGCCc-GGUGG- -5'
27462 5' -63.1 NC_005869.1 + 17834 0.66 0.231569
Target:  5'- uCCGGCcGCGggacGCGGgGGUcggcgaggggCGGGcCCGCCg -3'
miRNA:   3'- -GGUCGaCGU----CGUCgCCG----------GCCC-GGUGG- -5'
27462 5' -63.1 NC_005869.1 + 13380 0.66 0.225657
Target:  5'- gCCGGCUGUucaccuGGCGcacGCGcGCCcaggagauGGGCCugCc -3'
miRNA:   3'- -GGUCGACG------UCGU---CGC-CGG--------CCCGGugG- -5'
27462 5' -63.1 NC_005869.1 + 20605 0.66 0.225657
Target:  5'- gCGGCUgGUGGCGGCGGgaGaagcuGGCCACg -3'
miRNA:   3'- gGUCGA-CGUCGUCGCCggC-----CCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 24521 0.66 0.223328
Target:  5'- cUCAGcCUGCcccucuGCAGCGGCaccgcgcugcgcgGGGgCGCCu -3'
miRNA:   3'- -GGUC-GACGu-----CGUCGCCGg------------CCCgGUGG- -5'
27462 5' -63.1 NC_005869.1 + 18675 0.66 0.219874
Target:  5'- gCGGC-GcCGGCGGCGGgUGGcGCCGgCg -3'
miRNA:   3'- gGUCGaC-GUCGUCGCCgGCC-CGGUgG- -5'
27462 5' -63.1 NC_005869.1 + 6671 0.66 0.219874
Target:  5'- gCCAGCgGCG--GGCGGCCaGGgCGCg -3'
miRNA:   3'- -GGUCGaCGUcgUCGCCGGcCCgGUGg -5'
27462 5' -63.1 NC_005869.1 + 3552 0.66 0.219303
Target:  5'- aCAGCaGCAGCcggggacGGCGGCgacgGGGUCugUg -3'
miRNA:   3'- gGUCGaCGUCG-------UCGCCGg---CCCGGugG- -5'
27462 5' -63.1 NC_005869.1 + 5586 0.66 0.214218
Target:  5'- --cGCUGCGGCAGCGcucgcaCUGGGUCucgcacucgACCa -3'
miRNA:   3'- gguCGACGUCGUCGCc-----GGCCCGG---------UGG- -5'
27462 5' -63.1 NC_005869.1 + 15587 0.67 0.208687
Target:  5'- cCCGGCgGCGGCgcaGGCGcuccgcGCCG-GCCAUCc -3'
miRNA:   3'- -GGUCGaCGUCG---UCGC------CGGCcCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 30838 0.67 0.208687
Target:  5'- cCCAGUUGCAGCucaccAG-GGaCCGGGggGCCc -3'
miRNA:   3'- -GGUCGACGUCG-----UCgCC-GGCCCggUGG- -5'
27462 5' -63.1 NC_005869.1 + 17446 0.67 0.20328
Target:  5'- cCCGGC-GCccGCGGCGGuuCCGGuGCCuCCc -3'
miRNA:   3'- -GGUCGaCGu-CGUCGCC--GGCC-CGGuGG- -5'
27462 5' -63.1 NC_005869.1 + 10604 0.67 0.20328
Target:  5'- cCCGuuCUGCGGCAGaugaagccgcCGGCCGGcGCC-CUg -3'
miRNA:   3'- -GGUc-GACGUCGUC----------GCCGGCC-CGGuGG- -5'
27462 5' -63.1 NC_005869.1 + 5983 0.67 0.20328
Target:  5'- aCCGGCUGCGGguCGGgggguauaaaaGGCgCGGGCCggggugcgugGCCg -3'
miRNA:   3'- -GGUCGACGUC--GUCg----------CCG-GCCCGG----------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.