miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27469 5' -63.2 NC_005869.1 + 22515 0.65 0.254424
Target:  5'- cUCCUCCAGGuccuccucgcccucCCCGGCcaGCGCCCgGCg -3'
miRNA:   3'- cGGGGGGUUC--------------GGGCUGc-CGUGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 9110 0.66 0.249963
Target:  5'- cGCCCUCgucggggagUggGCUCGcGCGGCGCaCCaGCa -3'
miRNA:   3'- -CGGGGG---------GuuCGGGC-UGCCGUG-GGaCG- -5'
27469 5' -63.2 NC_005869.1 + 18530 0.66 0.243702
Target:  5'- gGUCCCCCGuGGUCUGcaugcgcgaagaACGGCGCCgCgcgcgGCg -3'
miRNA:   3'- -CGGGGGGU-UCGGGC------------UGCCGUGG-Ga----CG- -5'
27469 5' -63.2 NC_005869.1 + 29066 0.66 0.237572
Target:  5'- uGCCCuUCCucacCCCGGCuGGCACCUgccGCu -3'
miRNA:   3'- -CGGG-GGGuuc-GGGCUG-CCGUGGGa--CG- -5'
27469 5' -63.2 NC_005869.1 + 21208 0.66 0.237572
Target:  5'- uCCUCCguGGCCUGGCcgGGCAaugaccgCCUGCu -3'
miRNA:   3'- cGGGGGguUCGGGCUG--CCGUg------GGACG- -5'
27469 5' -63.2 NC_005869.1 + 16793 0.66 0.237572
Target:  5'- uGCCgCCCAccGCCaCGGaGGUgGCCCUGCc -3'
miRNA:   3'- -CGGgGGGUu-CGG-GCUgCCG-UGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 13086 0.66 0.236966
Target:  5'- gGCCCUCCAccccGGCCCucucGCgcgucccgucccgGGCAuccuCCCUGCu -3'
miRNA:   3'- -CGGGGGGU----UCGGGc---UG-------------CCGU----GGGACG- -5'
27469 5' -63.2 NC_005869.1 + 21777 0.66 0.231571
Target:  5'- --gCCCCGAGCggaacaccuCCGucuGCGGCACCUcGCu -3'
miRNA:   3'- cggGGGGUUCG---------GGC---UGCCGUGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 30739 0.66 0.231571
Target:  5'- cUCCCCCAuccaaAGCCCaucccacugGGCGGgGCCacguacCUGCa -3'
miRNA:   3'- cGGGGGGU-----UCGGG---------CUGCCgUGG------GACG- -5'
27469 5' -63.2 NC_005869.1 + 8501 0.66 0.230978
Target:  5'- aGCCCCCgCGugccggccuccgcGGCCuCGGCGGCGgCg-GCc -3'
miRNA:   3'- -CGGGGG-GU-------------UCGG-GCUGCCGUgGgaCG- -5'
27469 5' -63.2 NC_005869.1 + 5489 0.66 0.225699
Target:  5'- aGCUUgCCGGGgCCG-CGGUGCCC-GCa -3'
miRNA:   3'- -CGGGgGGUUCgGGCuGCCGUGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 9630 0.66 0.219954
Target:  5'- gGCCUCCgCGgcuGCgCCGGgGGCGgccUCCUGCa -3'
miRNA:   3'- -CGGGGG-GUu--CG-GGCUgCCGU---GGGACG- -5'
27469 5' -63.2 NC_005869.1 + 16861 0.67 0.216567
Target:  5'- aGCUCCCUGAccCCCGGCcuccgcgcgcugaugGGCACCgaGCg -3'
miRNA:   3'- -CGGGGGGUUc-GGGCUG---------------CCGUGGgaCG- -5'
27469 5' -63.2 NC_005869.1 + 24488 0.67 0.213779
Target:  5'- cCCCCgCCAcGCCgCcGCGGCGCCaggagaacggaacCUGCg -3'
miRNA:   3'- cGGGG-GGUuCGG-GcUGCCGUGG-------------GACG- -5'
27469 5' -63.2 NC_005869.1 + 10424 0.67 0.211021
Target:  5'- uCCCCCUgaagguggaugucaaGGGCCUGACGcuGCugCCggacgGCa -3'
miRNA:   3'- cGGGGGG---------------UUCGGGCUGC--CGugGGa----CG- -5'
27469 5' -63.2 NC_005869.1 + 25049 0.67 0.208837
Target:  5'- cGCCCUUCAAccGCCUGGUGGCGCUCa-- -3'
miRNA:   3'- -CGGGGGGUU--CGGGCUGCCGUGGGacg -5'
27469 5' -63.2 NC_005869.1 + 24528 0.67 0.208837
Target:  5'- uGCCCCUCu-GCa--GCGGCACCgcgCUGCg -3'
miRNA:   3'- -CGGGGGGuuCGggcUGCCGUGG---GACG- -5'
27469 5' -63.2 NC_005869.1 + 27478 0.67 0.208837
Target:  5'- aGCaCUCUCcGGCCgGACGGCAUCUUccaGCu -3'
miRNA:   3'- -CG-GGGGGuUCGGgCUGCCGUGGGA---CG- -5'
27469 5' -63.2 NC_005869.1 + 17865 0.67 0.208294
Target:  5'- aCCgCCgGGGgCCGAugaggggUGGCAUCCUGCc -3'
miRNA:   3'- cGGgGGgUUCgGGCU-------GCCGUGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 16630 0.67 0.203463
Target:  5'- gGCCggCCCCAGGCCguCG-UGGCGCCgCaGCu -3'
miRNA:   3'- -CGG--GGGGUUCGG--GCuGCCGUGG-GaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.