miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27470 3' -54.6 NC_005869.1 + 21372 0.66 0.576858
Target:  5'- cCUCCUcggcggucagggcauACGCCGcCGGCAGCcGCcGCu -3'
miRNA:   3'- -GAGGA---------------UGUGGUuGUCGUCGuCGuCGu -5'
27470 3' -54.6 NC_005869.1 + 1915 0.66 0.572232
Target:  5'- gCUgUUGC-CCAGugggucaucCGGCAGUGGCAGCGg -3'
miRNA:   3'- -GAgGAUGuGGUU---------GUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 9632 0.66 0.572232
Target:  5'- cCUCCgcggcUGCGCCGGgGGCGGCcuccuGCAGg- -3'
miRNA:   3'- -GAGG-----AUGUGGUUgUCGUCGu----CGUCgu -5'
27470 3' -54.6 NC_005869.1 + 9826 0.66 0.571076
Target:  5'- cCUCCUGCuggcagcgGCCGAUguccuugAGCuGCuccuGCAGCAg -3'
miRNA:   3'- -GAGGAUG--------UGGUUG-------UCGuCGu---CGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 23579 0.66 0.560705
Target:  5'- aCUCCagggUGCuGCCGucCGGCAGCAGCGuCAg -3'
miRNA:   3'- -GAGG----AUG-UGGUu-GUCGUCGUCGUcGU- -5'
27470 3' -54.6 NC_005869.1 + 14500 0.66 0.560705
Target:  5'- aCUCCaGCACCAucaAGCcccugaAGCAGgaCAGCAa -3'
miRNA:   3'- -GAGGaUGUGGUug-UCG------UCGUC--GUCGU- -5'
27470 3' -54.6 NC_005869.1 + 18657 0.66 0.549242
Target:  5'- cCUCCgACGUCGACgauGGCGGCgccGGCGGCGg -3'
miRNA:   3'- -GAGGaUGUGGUUG---UCGUCG---UCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 24382 0.66 0.549242
Target:  5'- aUCCUGCGCCAgguccuGCAGgaggccgccccCGGC-GCAGCc -3'
miRNA:   3'- gAGGAUGUGGU------UGUC-----------GUCGuCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 13285 0.66 0.537854
Target:  5'- aCUCgUAgguguagguCGCCccCGGCAGgAGCAGCAg -3'
miRNA:   3'- -GAGgAU---------GUGGuuGUCGUCgUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 11717 0.66 0.537854
Target:  5'- gCUCUgaaGCUggGGCGGCGGCGGCGGgGg -3'
miRNA:   3'- -GAGGaugUGG--UUGUCGUCGUCGUCgU- -5'
27470 3' -54.6 NC_005869.1 + 7609 0.66 0.537854
Target:  5'- -gCCcGCGCaGGCGGCGGCGccGCAGCu -3'
miRNA:   3'- gaGGaUGUGgUUGUCGUCGU--CGUCGu -5'
27470 3' -54.6 NC_005869.1 + 1601 0.67 0.493202
Target:  5'- aCUCCcagcgACAUgAGCGcguGCAGCuGGCAGCGg -3'
miRNA:   3'- -GAGGa----UGUGgUUGU---CGUCG-UCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 9605 0.67 0.493202
Target:  5'- gCUCCgcCACCGAgGGCGccuCGGCGGCc -3'
miRNA:   3'- -GAGGauGUGGUUgUCGUc--GUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 1832 0.67 0.48992
Target:  5'- aCUCCUGaugACCGcagacgagcaugauGgAGCAGCGGCAGgAg -3'
miRNA:   3'- -GAGGAUg--UGGU--------------UgUCGUCGUCGUCgU- -5'
27470 3' -54.6 NC_005869.1 + 5689 0.67 0.486648
Target:  5'- --gCUGCacgaugagggcggugGCCAGCAcGUAGCGGCGGUAg -3'
miRNA:   3'- gagGAUG---------------UGGUUGU-CGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 9580 0.67 0.482301
Target:  5'- cCUCCUGCugUuGCAGC-GCuuCGGCAa -3'
miRNA:   3'- -GAGGAUGugGuUGUCGuCGucGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 6782 0.67 0.471518
Target:  5'- gCUCCcGCaggagGCCGAUgaaguuggGGUAGCAGCGGCc -3'
miRNA:   3'- -GAGGaUG-----UGGUUG--------UCGUCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 2921 0.67 0.471518
Target:  5'- cCUCCgcaGCACCAuguuuguggGCGGCcGCcugGGCAGCu -3'
miRNA:   3'- -GAGGa--UGUGGU---------UGUCGuCG---UCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 17378 0.67 0.470446
Target:  5'- gCUCCaGCGCC-GCGGCcgcgcugAGCuGCGGCGc -3'
miRNA:   3'- -GAGGaUGUGGuUGUCG-------UCGuCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 33563 0.67 0.460858
Target:  5'- gUCa-GCACC-GCGGcCAGCAGCAGUc -3'
miRNA:   3'- gAGgaUGUGGuUGUC-GUCGUCGUCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.