miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27481 3' -55.5 NC_005869.1 + 16610 0.66 0.569007
Target:  5'- cGCcGGGccaccGGAACcaccGGGGCGCGcGGGGUg -3'
miRNA:   3'- -CGuCUC-----UCUUGua--CCUCGCGU-CCCCG- -5'
27481 3' -55.5 NC_005869.1 + 9506 0.66 0.557767
Target:  5'- gGUAGAaguugaggcGGGggUccGGGGCGCAGGuuccguucuccuGGCg -3'
miRNA:   3'- -CGUCU---------CUCuuGuaCCUCGCGUCC------------CCG- -5'
27481 3' -55.5 NC_005869.1 + 16165 0.66 0.535489
Target:  5'- gGCA-AGAGAGCccGGcGGCaGCGGcGGGCc -3'
miRNA:   3'- -CGUcUCUCUUGuaCC-UCG-CGUC-CCCG- -5'
27481 3' -55.5 NC_005869.1 + 10705 0.66 0.535489
Target:  5'- -gGGGGAGGGCcUGGcgcggcugucgGGCGCGGcGGCc -3'
miRNA:   3'- cgUCUCUCUUGuACC-----------UCGCGUCcCCG- -5'
27481 3' -55.5 NC_005869.1 + 3621 0.66 0.535489
Target:  5'- cGCGGAGGuGGGCAUGauGCGgCAGGcgcuGGCg -3'
miRNA:   3'- -CGUCUCU-CUUGUACcuCGC-GUCC----CCG- -5'
27481 3' -55.5 NC_005869.1 + 14171 0.66 0.535489
Target:  5'- cGCGaucguGGAGAACuaccuggcgGUGGGGCggcaGCAGGGGg -3'
miRNA:   3'- -CGUc----UCUCUUG---------UACCUCG----CGUCCCCg -5'
27481 3' -55.5 NC_005869.1 + 19131 0.66 0.535489
Target:  5'- -uGGAGGuGAugGUGGAcucuggcggGCGCAGGaGGa -3'
miRNA:   3'- cgUCUCU-CUugUACCU---------CGCGUCC-CCg -5'
27481 3' -55.5 NC_005869.1 + 13934 0.67 0.517893
Target:  5'- -uGGAGGcGAGCAcgcagaccaucaaccUGGAugagcgcuGCGCuGGGGCg -3'
miRNA:   3'- cgUCUCU-CUUGU---------------ACCU--------CGCGuCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 3896 0.67 0.501611
Target:  5'- aGCAGAaggucccGuAGGAgGUGGAGaa-GGGGGCg -3'
miRNA:   3'- -CGUCU-------C-UCUUgUACCUCgcgUCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 3172 0.67 0.501611
Target:  5'- aGCAGAaggucccGuAGGAgGUGGAGaa-GGGGGCg -3'
miRNA:   3'- -CGUCU-------C-UCUUgUACCUCgcgUCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 33063 0.67 0.496233
Target:  5'- aGCAGGGguacguccccagugaGGGACAccUGGA-UGgGGGGGCa -3'
miRNA:   3'- -CGUCUC---------------UCUUGU--ACCUcGCgUCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 8355 0.67 0.49195
Target:  5'- cGCAGugguacauGAGGAaguUGGcgaGGCGCAGGaGGUa -3'
miRNA:   3'- -CGUCu-------CUCUUgu-ACC---UCGCGUCC-CCG- -5'
27481 3' -55.5 NC_005869.1 + 5068 0.67 0.481317
Target:  5'- -gGGAGAGGAgGUGGgagagggaGGCGaaggccuugAGGGGCu -3'
miRNA:   3'- cgUCUCUCUUgUACC--------UCGCg--------UCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 7792 0.67 0.48026
Target:  5'- cGUGGAGcucgcuucGGACAcggucugcguagcUGGAGCGguGGuGGCg -3'
miRNA:   3'- -CGUCUCu-------CUUGU-------------ACCUCGCguCC-CCG- -5'
27481 3' -55.5 NC_005869.1 + 17053 0.67 0.470797
Target:  5'- cGCAcGGcccugcGGGGCAcGcGGCGCGGGGGCu -3'
miRNA:   3'- -CGUcUC------UCUUGUaCcUCGCGUCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 16393 0.68 0.44401
Target:  5'- gGCGGuGGGAGcCAUGGccugacugggaugauAGCGCAccccGGGCa -3'
miRNA:   3'- -CGUCuCUCUU-GUACC---------------UCGCGUc---CCCG- -5'
27481 3' -55.5 NC_005869.1 + 6524 0.68 0.439965
Target:  5'- aGCAGAGGcGGCcgcccuugcgGGAGCaGUAGGGGg -3'
miRNA:   3'- -CGUCUCUcUUGua--------CCUCG-CGUCCCCg -5'
27481 3' -55.5 NC_005869.1 + 178 0.68 0.439965
Target:  5'- -aGGGGAaGGgGUGGAGCcCuGGGGCg -3'
miRNA:   3'- cgUCUCUcUUgUACCUCGcGuCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 5454 0.68 0.439965
Target:  5'- -aGGAGAGGuguugggugGCAUGGcccuuGGCGCGgagcuugccGGGGCc -3'
miRNA:   3'- cgUCUCUCU---------UGUACC-----UCGCGU---------CCCCG- -5'
27481 3' -55.5 NC_005869.1 + 18830 0.68 0.439965
Target:  5'- gGCGGcGGGcgcccccguACAUGGAGCGCAGGc-- -3'
miRNA:   3'- -CGUCuCUCu--------UGUACCUCGCGUCCccg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.