Results 1 - 20 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 16610 | 0.66 | 0.569007 |
Target: 5'- cGCcGGGccaccGGAACcaccGGGGCGCGcGGGGUg -3' miRNA: 3'- -CGuCUC-----UCUUGua--CCUCGCGU-CCCCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 9506 | 0.66 | 0.557767 |
Target: 5'- gGUAGAaguugaggcGGGggUccGGGGCGCAGGuuccguucuccuGGCg -3' miRNA: 3'- -CGUCU---------CUCuuGuaCCUCGCGUCC------------CCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 16165 | 0.66 | 0.535489 |
Target: 5'- gGCA-AGAGAGCccGGcGGCaGCGGcGGGCc -3' miRNA: 3'- -CGUcUCUCUUGuaCC-UCG-CGUC-CCCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 10705 | 0.66 | 0.535489 |
Target: 5'- -gGGGGAGGGCcUGGcgcggcugucgGGCGCGGcGGCc -3' miRNA: 3'- cgUCUCUCUUGuACC-----------UCGCGUCcCCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 3621 | 0.66 | 0.535489 |
Target: 5'- cGCGGAGGuGGGCAUGauGCGgCAGGcgcuGGCg -3' miRNA: 3'- -CGUCUCU-CUUGUACcuCGC-GUCC----CCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 14171 | 0.66 | 0.535489 |
Target: 5'- cGCGaucguGGAGAACuaccuggcgGUGGGGCggcaGCAGGGGg -3' miRNA: 3'- -CGUc----UCUCUUG---------UACCUCG----CGUCCCCg -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 19131 | 0.66 | 0.535489 |
Target: 5'- -uGGAGGuGAugGUGGAcucuggcggGCGCAGGaGGa -3' miRNA: 3'- cgUCUCU-CUugUACCU---------CGCGUCC-CCg -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 13934 | 0.67 | 0.517893 |
Target: 5'- -uGGAGGcGAGCAcgcagaccaucaaccUGGAugagcgcuGCGCuGGGGCg -3' miRNA: 3'- cgUCUCU-CUUGU---------------ACCU--------CGCGuCCCCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 3896 | 0.67 | 0.501611 |
Target: 5'- aGCAGAaggucccGuAGGAgGUGGAGaa-GGGGGCg -3' miRNA: 3'- -CGUCU-------C-UCUUgUACCUCgcgUCCCCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 3172 | 0.67 | 0.501611 |
Target: 5'- aGCAGAaggucccGuAGGAgGUGGAGaa-GGGGGCg -3' miRNA: 3'- -CGUCU-------C-UCUUgUACCUCgcgUCCCCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 33063 | 0.67 | 0.496233 |
Target: 5'- aGCAGGGguacguccccagugaGGGACAccUGGA-UGgGGGGGCa -3' miRNA: 3'- -CGUCUC---------------UCUUGU--ACCUcGCgUCCCCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 8355 | 0.67 | 0.49195 |
Target: 5'- cGCAGugguacauGAGGAaguUGGcgaGGCGCAGGaGGUa -3' miRNA: 3'- -CGUCu-------CUCUUgu-ACC---UCGCGUCC-CCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 5068 | 0.67 | 0.481317 |
Target: 5'- -gGGAGAGGAgGUGGgagagggaGGCGaaggccuugAGGGGCu -3' miRNA: 3'- cgUCUCUCUUgUACC--------UCGCg--------UCCCCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 7792 | 0.67 | 0.48026 |
Target: 5'- cGUGGAGcucgcuucGGACAcggucugcguagcUGGAGCGguGGuGGCg -3' miRNA: 3'- -CGUCUCu-------CUUGU-------------ACCUCGCguCC-CCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 17053 | 0.67 | 0.470797 |
Target: 5'- cGCAcGGcccugcGGGGCAcGcGGCGCGGGGGCu -3' miRNA: 3'- -CGUcUC------UCUUGUaCcUCGCGUCCCCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 16393 | 0.68 | 0.44401 |
Target: 5'- gGCGGuGGGAGcCAUGGccugacugggaugauAGCGCAccccGGGCa -3' miRNA: 3'- -CGUCuCUCUU-GUACC---------------UCGCGUc---CCCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 6524 | 0.68 | 0.439965 |
Target: 5'- aGCAGAGGcGGCcgcccuugcgGGAGCaGUAGGGGg -3' miRNA: 3'- -CGUCUCUcUUGua--------CCUCG-CGUCCCCg -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 178 | 0.68 | 0.439965 |
Target: 5'- -aGGGGAaGGgGUGGAGCcCuGGGGCg -3' miRNA: 3'- cgUCUCUcUUgUACCUCGcGuCCCCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 5454 | 0.68 | 0.439965 |
Target: 5'- -aGGAGAGGuguugggugGCAUGGcccuuGGCGCGgagcuugccGGGGCc -3' miRNA: 3'- cgUCUCUCU---------UGUACC-----UCGCGU---------CCCCG- -5' |
|||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 18830 | 0.68 | 0.439965 |
Target: 5'- gGCGGcGGGcgcccccguACAUGGAGCGCAGGc-- -3' miRNA: 3'- -CGUCuCUCu--------UGUACCUCGCGUCCccg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home