miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27566 3' -53.1 NC_005882.1 + 24190 0.66 0.738297
Target:  5'- uGCCgaucgaacaUCGAGACgUaUGGCGCacaaGGC-CGCg -3'
miRNA:   3'- -CGGa--------AGCUUUGgA-ACCGCG----UCGuGCG- -5'
27566 3' -53.1 NC_005882.1 + 24192 0.66 0.738297
Target:  5'- cGCCUUCGccACgUcGGCGUAGaGCGa -3'
miRNA:   3'- -CGGAAGCuuUGgAaCCGCGUCgUGCg -5'
27566 3' -53.1 NC_005882.1 + 16529 0.66 0.727261
Target:  5'- uGCCUUgaGGACa-UGGUGCAGgAUGCu -3'
miRNA:   3'- -CGGAAgcUUUGgaACCGCGUCgUGCG- -5'
27566 3' -53.1 NC_005882.1 + 904 0.66 0.727261
Target:  5'- gGUCUgagGAAGCgCUUGGCGCuuucGUaaaGCGCa -3'
miRNA:   3'- -CGGAag-CUUUG-GAACCGCGu---CG---UGCG- -5'
27566 3' -53.1 NC_005882.1 + 18621 0.66 0.727261
Target:  5'- cGCCgcuaaccugUCGAcgAGCCgaucGCGCucuGCGCGCc -3'
miRNA:   3'- -CGGa--------AGCU--UUGGaac-CGCGu--CGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 29837 0.66 0.72504
Target:  5'- uGCCUUCGucugcagcguuGCCUUGGaGCcGGCcCGUg -3'
miRNA:   3'- -CGGAAGCuu---------UGGAACCgCG-UCGuGCG- -5'
27566 3' -53.1 NC_005882.1 + 30005 0.66 0.716121
Target:  5'- cGCCgUCcAGGCCggcaaaGGCgGCGGCACcGCg -3'
miRNA:   3'- -CGGaAGcUUUGGaa----CCG-CGUCGUG-CG- -5'
27566 3' -53.1 NC_005882.1 + 4909 0.66 0.716121
Target:  5'- cGUgUUCcguGCCgcGGCGCGGCAgGUa -3'
miRNA:   3'- -CGgAAGcuuUGGaaCCGCGUCGUgCG- -5'
27566 3' -53.1 NC_005882.1 + 34578 0.66 0.716121
Target:  5'- aCCgUCGGAACCgacauacUGGCGUuGCGCa- -3'
miRNA:   3'- cGGaAGCUUUGGa------ACCGCGuCGUGcg -5'
27566 3' -53.1 NC_005882.1 + 18977 0.66 0.716121
Target:  5'- aGCCgucgcggCGAGGuCCguuucGGCGaaaucaAGCACGCg -3'
miRNA:   3'- -CGGaa-----GCUUU-GGaa---CCGCg-----UCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 21584 0.66 0.70489
Target:  5'- aCCgUCGGAACC--GGCGaCAGCG-GCa -3'
miRNA:   3'- cGGaAGCUUUGGaaCCGC-GUCGUgCG- -5'
27566 3' -53.1 NC_005882.1 + 2046 0.66 0.701505
Target:  5'- uGCCUccagccagcgcggaUCGGugauguCCaaucGGCGCAGCGCGa -3'
miRNA:   3'- -CGGA--------------AGCUuu----GGaa--CCGCGUCGUGCg -5'
27566 3' -53.1 NC_005882.1 + 18251 0.66 0.693581
Target:  5'- cGCCUgCGcGAUCUU-GCGCAuCGCGCc -3'
miRNA:   3'- -CGGAaGCuUUGGAAcCGCGUcGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 25562 0.66 0.693581
Target:  5'- gGCCcUUGcGACCcggcUGGCGCgcGGCGcCGCg -3'
miRNA:   3'- -CGGaAGCuUUGGa---ACCGCG--UCGU-GCG- -5'
27566 3' -53.1 NC_005882.1 + 16094 0.66 0.692446
Target:  5'- gGCCccaUUCGAGcgcuuucacggccGCCUUgcGGCGgC-GCACGCa -3'
miRNA:   3'- -CGG---AAGCUU-------------UGGAA--CCGC-GuCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 14811 0.67 0.686764
Target:  5'- cGCCaUCGcgGCCUUGaGCGCucGCcgagcugcucguggaACGCu -3'
miRNA:   3'- -CGGaAGCuuUGGAAC-CGCGu-CG---------------UGCG- -5'
27566 3' -53.1 NC_005882.1 + 21074 0.67 0.682208
Target:  5'- cGgCUUCGAugguGGCg-UGuGCGCAGCcgGCGCg -3'
miRNA:   3'- -CgGAAGCU----UUGgaAC-CGCGUCG--UGCG- -5'
27566 3' -53.1 NC_005882.1 + 25351 0.67 0.682208
Target:  5'- cGCUacUCGGuAGCUUcGGCGCcgcgcuuuccGGCACGCg -3'
miRNA:   3'- -CGGa-AGCU-UUGGAaCCGCG----------UCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 8030 0.67 0.681067
Target:  5'- aGCC--CGAacucGACCUUGGaGCAGCcgaaugaccgcgaACGCa -3'
miRNA:   3'- -CGGaaGCU----UUGGAACCgCGUCG-------------UGCG- -5'
27566 3' -53.1 NC_005882.1 + 25446 0.67 0.670782
Target:  5'- cGCCUggGGGACgCgaUGGCGCGgGCcguuGCGCa -3'
miRNA:   3'- -CGGAagCUUUG-Ga-ACCGCGU-CG----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.