Results 1 - 20 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 30621 | 0.66 | 0.818227 |
Target: 5'- uGGCCGGauCGGGCG--GCGAUgGCGc -3' miRNA: 3'- gCCGGUUacGUCUGCuuUGCUAgCGC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 20038 | 0.66 | 0.818227 |
Target: 5'- --uCCGGUGCuGACGAAucucGCGAUCGg- -3' miRNA: 3'- gccGGUUACGuCUGCUU----UGCUAGCgc -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 18403 | 0.66 | 0.818227 |
Target: 5'- cCGGCCu-UGCGacGCGAcGCGGcCGCGg -3' miRNA: 3'- -GCCGGuuACGUc-UGCUuUGCUaGCGC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 35910 | 0.66 | 0.818227 |
Target: 5'- uCGGCguGacuuuccgGCAGAaGGcAGCGAUCGCGa -3' miRNA: 3'- -GCCGguUa-------CGUCUgCU-UUGCUAGCGC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 4001 | 0.66 | 0.815304 |
Target: 5'- gGGCCAcgGCGGccaugauugcuuccGCGAuguGCG-UCGCc -3' miRNA: 3'- gCCGGUuaCGUC--------------UGCUu--UGCuAGCGc -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 21091 | 0.66 | 0.798386 |
Target: 5'- aGGCCGGcgGCAG-CGGuAACGGaCGUGg -3' miRNA: 3'- gCCGGUUa-CGUCuGCU-UUGCUaGCGC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 4206 | 0.66 | 0.777783 |
Target: 5'- gGGCgGcgGCaAGACGAcGCuGAUgCGCGa -3' miRNA: 3'- gCCGgUuaCG-UCUGCUuUG-CUA-GCGC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 32092 | 0.66 | 0.776734 |
Target: 5'- aCGGCC---GCAGAagccuacCGAAcCGAUCGUGc -3' miRNA: 3'- -GCCGGuuaCGUCU-------GCUUuGCUAGCGC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 7682 | 0.67 | 0.756517 |
Target: 5'- gGGUUugAAUGCuGuCGAGGCGcUCGCGg -3' miRNA: 3'- gCCGG--UUACGuCuGCUUUGCuAGCGC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 28038 | 0.67 | 0.756517 |
Target: 5'- -aGCCGA-GCuGGCGAAGCuGcgCGCGg -3' miRNA: 3'- gcCGGUUaCGuCUGCUUUG-CuaGCGC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 15437 | 0.67 | 0.745669 |
Target: 5'- aCGGCCAAUaccucGCAGaagucGCGAugcagcgcuacGGCGcAUCGCGc -3' miRNA: 3'- -GCCGGUUA-----CGUC-----UGCU-----------UUGC-UAGCGC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 18624 | 0.67 | 0.745669 |
Target: 5'- -cGCUAAccUGUcGACGAGcCGAUCGCGc -3' miRNA: 3'- gcCGGUU--ACGuCUGCUUuGCUAGCGC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 27656 | 0.67 | 0.742389 |
Target: 5'- gCGGCCGcggccugcgucgccAUGCcGGCGGccGCGcgCGCGg -3' miRNA: 3'- -GCCGGU--------------UACGuCUGCUu-UGCuaGCGC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 20444 | 0.67 | 0.734694 |
Target: 5'- gCGGCCg--GCAG-CGAucCGGUCgGCGu -3' miRNA: 3'- -GCCGGuuaCGUCuGCUuuGCUAG-CGC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 26770 | 0.67 | 0.734694 |
Target: 5'- uCGGCCGGgauggGCGGccGCGAAcugcGCGGUgCGCu -3' miRNA: 3'- -GCCGGUUa----CGUC--UGCUU----UGCUA-GCGc -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 12157 | 0.67 | 0.734694 |
Target: 5'- cCGGCCGA-GCuGGGCGAGGCGca-GCc -3' miRNA: 3'- -GCCGGUUaCG-UCUGCUUUGCuagCGc -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 28585 | 0.68 | 0.712419 |
Target: 5'- uCGGCgCAAggcgGCuuGGCGAacgcGACGAUCGgGa -3' miRNA: 3'- -GCCG-GUUa---CGu-CUGCU----UUGCUAGCgC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 11067 | 0.68 | 0.701145 |
Target: 5'- aCGaGCaAAUGCGGGCGAuGgGAUaCGCGg -3' miRNA: 3'- -GC-CGgUUACGUCUGCUuUgCUA-GCGC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 30182 | 0.68 | 0.701145 |
Target: 5'- aCGGUCAGUGCGu-CGAAGCccggcuUCGCGc -3' miRNA: 3'- -GCCGGUUACGUcuGCUUUGcu----AGCGC- -5' |
|||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 33993 | 0.68 | 0.701145 |
Target: 5'- uGGCCGGUGaguuguuuagcCAGuACGGAACGAcugcCGCGc -3' miRNA: 3'- gCCGGUUAC-----------GUC-UGCUUUGCUa---GCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home