miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27571 5' -51.9 NC_005882.1 + 20038 0.66 0.818227
Target:  5'- --uCCGGUGCuGACGAAucucGCGAUCGg- -3'
miRNA:   3'- gccGGUUACGuCUGCUU----UGCUAGCgc -5'
27571 5' -51.9 NC_005882.1 + 35910 0.66 0.818227
Target:  5'- uCGGCguGacuuuccgGCAGAaGGcAGCGAUCGCGa -3'
miRNA:   3'- -GCCGguUa-------CGUCUgCU-UUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 18403 0.66 0.818227
Target:  5'- cCGGCCu-UGCGacGCGAcGCGGcCGCGg -3'
miRNA:   3'- -GCCGGuuACGUc-UGCUuUGCUaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 30621 0.66 0.818227
Target:  5'- uGGCCGGauCGGGCG--GCGAUgGCGc -3'
miRNA:   3'- gCCGGUUacGUCUGCuuUGCUAgCGC- -5'
27571 5' -51.9 NC_005882.1 + 4001 0.66 0.815304
Target:  5'- gGGCCAcgGCGGccaugauugcuuccGCGAuguGCG-UCGCc -3'
miRNA:   3'- gCCGGUuaCGUC--------------UGCUu--UGCuAGCGc -5'
27571 5' -51.9 NC_005882.1 + 21091 0.66 0.798386
Target:  5'- aGGCCGGcgGCAG-CGGuAACGGaCGUGg -3'
miRNA:   3'- gCCGGUUa-CGUCuGCU-UUGCUaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 4206 0.66 0.777783
Target:  5'- gGGCgGcgGCaAGACGAcGCuGAUgCGCGa -3'
miRNA:   3'- gCCGgUuaCG-UCUGCUuUG-CUA-GCGC- -5'
27571 5' -51.9 NC_005882.1 + 32092 0.66 0.776734
Target:  5'- aCGGCC---GCAGAagccuacCGAAcCGAUCGUGc -3'
miRNA:   3'- -GCCGGuuaCGUCU-------GCUUuGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 7682 0.67 0.756517
Target:  5'- gGGUUugAAUGCuGuCGAGGCGcUCGCGg -3'
miRNA:   3'- gCCGG--UUACGuCuGCUUUGCuAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 28038 0.67 0.756517
Target:  5'- -aGCCGA-GCuGGCGAAGCuGcgCGCGg -3'
miRNA:   3'- gcCGGUUaCGuCUGCUUUG-CuaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 15437 0.67 0.745669
Target:  5'- aCGGCCAAUaccucGCAGaagucGCGAugcagcgcuacGGCGcAUCGCGc -3'
miRNA:   3'- -GCCGGUUA-----CGUC-----UGCU-----------UUGC-UAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 18624 0.67 0.745669
Target:  5'- -cGCUAAccUGUcGACGAGcCGAUCGCGc -3'
miRNA:   3'- gcCGGUU--ACGuCUGCUUuGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 27656 0.67 0.742389
Target:  5'- gCGGCCGcggccugcgucgccAUGCcGGCGGccGCGcgCGCGg -3'
miRNA:   3'- -GCCGGU--------------UACGuCUGCUu-UGCuaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 12157 0.67 0.734694
Target:  5'- cCGGCCGA-GCuGGGCGAGGCGca-GCc -3'
miRNA:   3'- -GCCGGUUaCG-UCUGCUUUGCuagCGc -5'
27571 5' -51.9 NC_005882.1 + 20444 0.67 0.734694
Target:  5'- gCGGCCg--GCAG-CGAucCGGUCgGCGu -3'
miRNA:   3'- -GCCGGuuaCGUCuGCUuuGCUAG-CGC- -5'
27571 5' -51.9 NC_005882.1 + 26770 0.67 0.734694
Target:  5'- uCGGCCGGgauggGCGGccGCGAAcugcGCGGUgCGCu -3'
miRNA:   3'- -GCCGGUUa----CGUC--UGCUU----UGCUA-GCGc -5'
27571 5' -51.9 NC_005882.1 + 28585 0.68 0.712419
Target:  5'- uCGGCgCAAggcgGCuuGGCGAacgcGACGAUCGgGa -3'
miRNA:   3'- -GCCG-GUUa---CGu-CUGCU----UUGCUAGCgC- -5'
27571 5' -51.9 NC_005882.1 + 11067 0.68 0.701145
Target:  5'- aCGaGCaAAUGCGGGCGAuGgGAUaCGCGg -3'
miRNA:   3'- -GC-CGgUUACGUCUGCUuUgCUA-GCGC- -5'
27571 5' -51.9 NC_005882.1 + 30182 0.68 0.701145
Target:  5'- aCGGUCAGUGCGu-CGAAGCccggcuUCGCGc -3'
miRNA:   3'- -GCCGGUUACGUcuGCUUUGcu----AGCGC- -5'
27571 5' -51.9 NC_005882.1 + 33993 0.68 0.701145
Target:  5'- uGGCCGGUGaguuguuuagcCAGuACGGAACGAcugcCGCGc -3'
miRNA:   3'- gCCGGUUAC-----------GUC-UGCUUUGCUa---GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.