miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27594 5' -61.7 NC_005882.1 + 3383 0.66 0.346586
Target:  5'- --gCUUGCG-CGCGggcgcuGCGCGGCC-UGGg -3'
miRNA:   3'- ccgGAACGCuGCGC------UGCGCCGGcGCC- -5'
27594 5' -61.7 NC_005882.1 + 31635 0.66 0.346586
Target:  5'- -aCCUggGCGACGuCGACGUgacGGUCGCu- -3'
miRNA:   3'- ccGGAa-CGCUGC-GCUGCG---CCGGCGcc -5'
27594 5' -61.7 NC_005882.1 + 16694 0.66 0.338576
Target:  5'- -aCCgagGCGACGuCGACGCGcgcguCCGCGc -3'
miRNA:   3'- ccGGaa-CGCUGC-GCUGCGCc----GGCGCc -5'
27594 5' -61.7 NC_005882.1 + 15417 0.66 0.338576
Target:  5'- cGCCUU-CGACGCG-CGgGGCaaCGGc -3'
miRNA:   3'- cCGGAAcGCUGCGCuGCgCCGgcGCC- -5'
27594 5' -61.7 NC_005882.1 + 19550 0.66 0.330702
Target:  5'- cGCCgacGCGcagGCGCGugaGCGCaaGGCgGCGGa -3'
miRNA:   3'- cCGGaa-CGC---UGCGC---UGCG--CCGgCGCC- -5'
27594 5' -61.7 NC_005882.1 + 13782 0.66 0.322963
Target:  5'- uGGCCg-GCcGCGCGAUGCccGGCuCGCa- -3'
miRNA:   3'- -CCGGaaCGcUGCGCUGCG--CCG-GCGcc -5'
27594 5' -61.7 NC_005882.1 + 21676 0.66 0.318385
Target:  5'- aGGUC-UGCGacacgguguccgggaGCGCGGCGCcuuccGGUCGaCGGg -3'
miRNA:   3'- -CCGGaACGC---------------UGCGCUGCG-----CCGGC-GCC- -5'
27594 5' -61.7 NC_005882.1 + 14290 0.66 0.31536
Target:  5'- aGGCCgcUGCucuuGACGaccuuGuCGaCGGCCGCGGc -3'
miRNA:   3'- -CCGGa-ACG----CUGCg----CuGC-GCCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 27648 0.66 0.31536
Target:  5'- nGCC-UGCGuCGCcauGCcgGCGGCCGCGc -3'
miRNA:   3'- cCGGaACGCuGCGc--UG--CGCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 12566 0.66 0.307893
Target:  5'- cGGCgCacugGCGGC-UGGCGCGGUCGCu- -3'
miRNA:   3'- -CCG-Gaa--CGCUGcGCUGCGCCGGCGcc -5'
27594 5' -61.7 NC_005882.1 + 17819 0.66 0.307893
Target:  5'- uGCCggugccGCGugGUGGCGCuGUCGCa- -3'
miRNA:   3'- cCGGaa----CGCugCGCUGCGcCGGCGcc -5'
27594 5' -61.7 NC_005882.1 + 12588 0.67 0.300562
Target:  5'- cGGCCgc-CGcCGCGACacacUGGCCGCGc -3'
miRNA:   3'- -CCGGaacGCuGCGCUGc---GCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 29344 0.67 0.296228
Target:  5'- uGGCCUUGCGGCuucggacCGAUGCcuucacgccaguaccGaGuCCGCGGa -3'
miRNA:   3'- -CCGGAACGCUGc------GCUGCG---------------C-C-GGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 25648 0.67 0.293366
Target:  5'- uGGCgUUGCucACGCaGCGCGgcGCCGCGc -3'
miRNA:   3'- -CCGgAACGc-UGCGcUGCGC--CGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 14941 0.67 0.293366
Target:  5'- cGGCgaacGUGAUGCGAUGCaGGCUGUaGGg -3'
miRNA:   3'- -CCGgaa-CGCUGCGCUGCG-CCGGCG-CC- -5'
27594 5' -61.7 NC_005882.1 + 26992 0.67 0.293366
Target:  5'- aGCC-UGUuuaugggauucgGGCGCGGCGCgcucgucguuGGCCGCGc -3'
miRNA:   3'- cCGGaACG------------CUGCGCUGCG----------CCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 26146 0.67 0.290525
Target:  5'- cGGCCgcgaaggcgccgGCaGugGCGACGaaGCCGUGa -3'
miRNA:   3'- -CCGGaa----------CG-CugCGCUGCgcCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 35889 0.67 0.286305
Target:  5'- aGGCa--GCGAuCGCGACGCuGaCCGCa- -3'
miRNA:   3'- -CCGgaaCGCU-GCGCUGCGcC-GGCGcc -5'
27594 5' -61.7 NC_005882.1 + 22736 0.67 0.286305
Target:  5'- aGCgCUUGCGGgauCGUGAagccgGCGaGCUGCGGg -3'
miRNA:   3'- cCG-GAACGCU---GCGCUg----CGC-CGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 25634 0.67 0.27938
Target:  5'- cGGCacauacGCGACgGCGGCugccaCGGCCGCGc -3'
miRNA:   3'- -CCGgaa---CGCUG-CGCUGc----GCCGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.