miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27595 5' -61.1 NC_005882.1 + 9564 0.66 0.338907
Target:  5'- gCGCgUcGUGCUUGCGgcCGCCaGCGCGc -3'
miRNA:   3'- gGCGgAaCGCGAGUGC--GCGGaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 19297 0.66 0.330888
Target:  5'- aUGCgg-GC-CUCugGCgcaGCCUGCGCGa -3'
miRNA:   3'- gGCGgaaCGcGAGugCG---CGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 3558 0.66 0.330888
Target:  5'- gCCGCgaUGaaucuCGC-CGCGgGCCUGgGCGu -3'
miRNA:   3'- -GGCGgaAC-----GCGaGUGCgCGGACgCGC- -5'
27595 5' -61.1 NC_005882.1 + 23084 0.66 0.330888
Target:  5'- uCCGgC-UGCGUUCACgGCGCCgaugaugucCGCGg -3'
miRNA:   3'- -GGCgGaACGCGAGUG-CGCGGac-------GCGC- -5'
27595 5' -61.1 NC_005882.1 + 3324 0.66 0.32301
Target:  5'- gCCGCgcaGCGCcCGCGCGCaaGCGUu -3'
miRNA:   3'- -GGCGgaaCGCGaGUGCGCGgaCGCGc -5'
27595 5' -61.1 NC_005882.1 + 4946 0.66 0.32301
Target:  5'- aCGaCCUcguUGCGC-CGCGCGUCgaacucGCGCc -3'
miRNA:   3'- gGC-GGA---ACGCGaGUGCGCGGa-----CGCGc -5'
27595 5' -61.1 NC_005882.1 + 6818 0.66 0.320674
Target:  5'- gUCGaUCUUcGCGUUCuugucggacagcagACGCGUUUGCGCGg -3'
miRNA:   3'- -GGC-GGAA-CGCGAG--------------UGCGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 7858 0.66 0.315272
Target:  5'- gUCGCCUUGgugaGUUCGCcggGCGUCaggccaUGCGCGa -3'
miRNA:   3'- -GGCGGAACg---CGAGUG---CGCGG------ACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 12616 0.66 0.315272
Target:  5'- gCCGCCagUGCGCcgaUCGCcgcaGCGCCgGcCGCc -3'
miRNA:   3'- -GGCGGa-ACGCG---AGUG----CGCGGaC-GCGc -5'
27595 5' -61.1 NC_005882.1 + 2115 0.66 0.307675
Target:  5'- gCCuuCCUUGuCGgUCGCaaaCGCCUGCGUGa -3'
miRNA:   3'- -GGc-GGAAC-GCgAGUGc--GCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 13352 0.66 0.29801
Target:  5'- uCCGCCUgaaaucgcagaaaaUcGCGCUCcagGCGCGCC-GUGUu -3'
miRNA:   3'- -GGCGGA--------------A-CGCGAG---UGCGCGGaCGCGc -5'
27595 5' -61.1 NC_005882.1 + 26613 0.67 0.285728
Target:  5'- uCCGCgcgGCGCacguaguccuggUCGaugguauucaGCGCCUGCGCGc -3'
miRNA:   3'- -GGCGgaaCGCG------------AGUg---------CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 25573 0.67 0.285728
Target:  5'- cCCGgCUgGCGCgcggCGC-CGCgCUGCGUGa -3'
miRNA:   3'- -GGCgGAaCGCGa---GUGcGCG-GACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 6401 0.67 0.285728
Target:  5'- -gGCCggcCGCgCGCGCuGCCUGgGCGa -3'
miRNA:   3'- ggCGGaacGCGaGUGCG-CGGACgCGC- -5'
27595 5' -61.1 NC_005882.1 + 23202 0.67 0.278691
Target:  5'- gCGCCgaucgGCacgacGCUCGCGCaggcgcugGCCggGCGCGg -3'
miRNA:   3'- gGCGGaa---CG-----CGAGUGCG--------CGGa-CGCGC- -5'
27595 5' -61.1 NC_005882.1 + 9198 0.67 0.278691
Target:  5'- gCGCCauUUGgGUaaucguauggauUCAauaggcgaGCGCCUGCGCGa -3'
miRNA:   3'- gGCGG--AACgCG------------AGUg-------CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 14182 0.67 0.271794
Target:  5'- uCCGCCUggagGUGCaggCACGCGCggaaGCGg -3'
miRNA:   3'- -GGCGGAa---CGCGa--GUGCGCGgacgCGC- -5'
27595 5' -61.1 NC_005882.1 + 7692 0.67 0.265034
Target:  5'- gCUGUCgagGCGCUCGCGgGCg-GCGuCGa -3'
miRNA:   3'- -GGCGGaa-CGCGAGUGCgCGgaCGC-GC- -5'
27595 5' -61.1 NC_005882.1 + 19760 0.67 0.263033
Target:  5'- aUCGCCUUcGCcgaacucgaacgGCUCACGUGCCgugaagucgagaaaUGCGaCGa -3'
miRNA:   3'- -GGCGGAA-CG------------CGAGUGCGCGG--------------ACGC-GC- -5'
27595 5' -61.1 NC_005882.1 + 12384 0.67 0.258411
Target:  5'- gCCGCCg-GCaGCcgUCACGCGCUgauCGCGa -3'
miRNA:   3'- -GGCGGaaCG-CG--AGUGCGCGGac-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.