miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27632 5' -49.5 NC_005882.1 + 23736 0.66 0.913333
Target:  5'- -cGCAAGCuGaUCggCGAcgGCGCGcUGCu -3'
miRNA:   3'- gaCGUUCG-CaAGuaGCU--UGCGCuACG- -5'
27632 5' -49.5 NC_005882.1 + 7992 0.66 0.913333
Target:  5'- gCUGUAcauGGCGcUCGaCGuugcCGCGAUGCc -3'
miRNA:   3'- -GACGU---UCGCaAGUaGCuu--GCGCUACG- -5'
27632 5' -49.5 NC_005882.1 + 18155 0.66 0.913333
Target:  5'- gCUGCAgcucgaacaAGcCGgcCAUCaGAaggcugGCGCGAUGCg -3'
miRNA:   3'- -GACGU---------UC-GCaaGUAG-CU------UGCGCUACG- -5'
27632 5' -49.5 NC_005882.1 + 28280 0.66 0.909202
Target:  5'- -cGCAGGCGgucuccagcgucaCAUCGGcgguggccaccGCGCGAgGCa -3'
miRNA:   3'- gaCGUUCGCaa-----------GUAGCU-----------UGCGCUaCG- -5'
27632 5' -49.5 NC_005882.1 + 9229 0.66 0.906385
Target:  5'- -gGCGAGCGccugcgCGagGAGCGUGA-GCg -3'
miRNA:   3'- gaCGUUCGCaa----GUagCUUGCGCUaCG- -5'
27632 5' -49.5 NC_005882.1 + 15281 0.66 0.906385
Target:  5'- uUGUacGAGCGggCGUCGAcCGgGA-GCg -3'
miRNA:   3'- gACG--UUCGCaaGUAGCUuGCgCUaCG- -5'
27632 5' -49.5 NC_005882.1 + 25555 0.66 0.899126
Target:  5'- -aGCAAGCGgcccuugCGAcccggcugGCGCGcgGCg -3'
miRNA:   3'- gaCGUUCGCaagua--GCU--------UGCGCuaCG- -5'
27632 5' -49.5 NC_005882.1 + 29520 0.66 0.899126
Target:  5'- cCUGCGAG-G---AUCGGACGCGGUccaGCa -3'
miRNA:   3'- -GACGUUCgCaagUAGCUUGCGCUA---CG- -5'
27632 5' -49.5 NC_005882.1 + 3862 0.66 0.899126
Target:  5'- gUGCuuGAGCGUcgCgAUCGGcaGCGCG-UGCg -3'
miRNA:   3'- gACG--UUCGCAa-G-UAGCU--UGCGCuACG- -5'
27632 5' -49.5 NC_005882.1 + 27013 0.66 0.899126
Target:  5'- -cGCGGcGCGcUCGUCGuuggccGCGCGcUGCu -3'
miRNA:   3'- gaCGUU-CGCaAGUAGCu-----UGCGCuACG- -5'
27632 5' -49.5 NC_005882.1 + 36416 0.66 0.899126
Target:  5'- aCUGCGAGa-UUCgGUCGAGC-CGAUGa -3'
miRNA:   3'- -GACGUUCgcAAG-UAGCUUGcGCUACg -5'
27632 5' -49.5 NC_005882.1 + 16557 0.66 0.899126
Target:  5'- -aGCAGGUucuuuucgcCAUCGGAUGCGcUGCg -3'
miRNA:   3'- gaCGUUCGcaa------GUAGCUUGCGCuACG- -5'
27632 5' -49.5 NC_005882.1 + 6038 0.66 0.899126
Target:  5'- gUGCGAGCaGUUgGUCGGgauggACGCcauacAUGCg -3'
miRNA:   3'- gACGUUCG-CAAgUAGCU-----UGCGc----UACG- -5'
27632 5' -49.5 NC_005882.1 + 18826 0.66 0.89156
Target:  5'- uUGCGccGGCGUgauac--GCGCGAUGCa -3'
miRNA:   3'- gACGU--UCGCAaguagcuUGCGCUACG- -5'
27632 5' -49.5 NC_005882.1 + 34096 0.66 0.883692
Target:  5'- -cGCAAGUuucgagcugUUAUCGAACuGCGcgGCa -3'
miRNA:   3'- gaCGUUCGca-------AGUAGCUUG-CGCuaCG- -5'
27632 5' -49.5 NC_005882.1 + 32820 0.67 0.875527
Target:  5'- -cGCGAGUacgCAUCGAgccgGCGCGAacGCa -3'
miRNA:   3'- gaCGUUCGcaaGUAGCU----UGCGCUa-CG- -5'
27632 5' -49.5 NC_005882.1 + 8403 0.67 0.872181
Target:  5'- -cGCGAGCGgcgcaaucucagCGUCGAACGCa---- -3'
miRNA:   3'- gaCGUUCGCaa----------GUAGCUUGCGcuacg -5'
27632 5' -49.5 NC_005882.1 + 23911 0.67 0.867075
Target:  5'- -cGuCAGGCGUUCGagCGGugGCGGcaccgUGUa -3'
miRNA:   3'- gaC-GUUCGCAAGUa-GCUugCGCU-----ACG- -5'
27632 5' -49.5 NC_005882.1 + 13262 0.67 0.867075
Target:  5'- -gGCAGGCGgaCAacacggcgcgccUgGAGCGCGAuuuucUGCg -3'
miRNA:   3'- gaCGUUCGCaaGU------------AgCUUGCGCU-----ACG- -5'
27632 5' -49.5 NC_005882.1 + 19931 0.67 0.867075
Target:  5'- -cGC-GGCGgcCG-CGAACGCGGUGa -3'
miRNA:   3'- gaCGuUCGCaaGUaGCUUGCGCUACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.