miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27634 3' -58.4 NC_005882.1 + 15980 0.66 0.443707
Target:  5'- --cGCGagCUGCGCGCGGacGCGcacgUCGGCg -3'
miRNA:   3'- cguCGCg-GGCGCGCGUU--CGCa---AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 27110 0.66 0.443707
Target:  5'- uGCuGCugGCCCGCGUccuGGGCGgcCAGCu -3'
miRNA:   3'- -CGuCG--CGGGCGCGcg-UUCGCaaGUCG- -5'
27634 3' -58.4 NC_005882.1 + 27013 0.66 0.443707
Target:  5'- cGCGGCGCgcucgucguuggCCGCGCGCu-GCucccuUUCGGg -3'
miRNA:   3'- -CGUCGCG------------GGCGCGCGuuCGc----AAGUCg -5'
27634 3' -58.4 NC_005882.1 + 14144 0.66 0.433894
Target:  5'- cGCGaCGCUgGCccGCGCGAGCGUgaacCAGa -3'
miRNA:   3'- -CGUcGCGGgCG--CGCGUUCGCAa---GUCg -5'
27634 3' -58.4 NC_005882.1 + 30445 0.66 0.433894
Target:  5'- --cGgGUCCGUGacggGCGGGCGaUCGGCa -3'
miRNA:   3'- cguCgCGGGCGCg---CGUUCGCaAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 17699 0.66 0.43292
Target:  5'- cGUAGCgGCCCGCcaUGUAGGCcgucugcagguucGUUCGGUa -3'
miRNA:   3'- -CGUCG-CGGGCGc-GCGUUCG-------------CAAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 26695 0.66 0.431947
Target:  5'- cCAGCGCaCCGCGCaGUucGCGgccgcccauccCGGCc -3'
miRNA:   3'- cGUCGCG-GGCGCG-CGuuCGCaa---------GUCG- -5'
27634 3' -58.4 NC_005882.1 + 3666 0.66 0.424209
Target:  5'- aGCGGCG-UCGaCGCGCu-GCGcacUCGGCu -3'
miRNA:   3'- -CGUCGCgGGC-GCGCGuuCGCa--AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 10105 0.66 0.421329
Target:  5'- gGCGGCGCuuGgUGCGguGgacuugaucgcuacGCGgUUCAGCc -3'
miRNA:   3'- -CGUCGCGggC-GCGCguU--------------CGC-AAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 26727 0.66 0.414654
Target:  5'- aGCGGCGUgaCCGUGUucaucagguccGUGAGCGacggCAGCa -3'
miRNA:   3'- -CGUCGCG--GGCGCG-----------CGUUCGCaa--GUCG- -5'
27634 3' -58.4 NC_005882.1 + 18983 0.66 0.414654
Target:  5'- uGCAGCaGCCguCGCG-GCGAGgucCGuUUCGGCg -3'
miRNA:   3'- -CGUCG-CGG--GCGCgCGUUC---GC-AAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 31461 0.66 0.414654
Target:  5'- cGCAGCGUcgucuUCGCGgGCu-GCGccggCAGCc -3'
miRNA:   3'- -CGUCGCG-----GGCGCgCGuuCGCaa--GUCG- -5'
27634 3' -58.4 NC_005882.1 + 14816 0.66 0.405232
Target:  5'- aGCAGCGCCauCGCG-GCcuuGAGCGcUCgccgAGCu -3'
miRNA:   3'- -CGUCGCGG--GCGCgCG---UUCGCaAG----UCG- -5'
27634 3' -58.4 NC_005882.1 + 23725 0.66 0.395947
Target:  5'- aCGG-GUUCGgGCGCAAGCuGaUCGGCg -3'
miRNA:   3'- cGUCgCGGGCgCGCGUUCG-CaAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 27152 0.66 0.395947
Target:  5'- aGCAGCauCCCGCccuGgGCGAGCagccgCAGCg -3'
miRNA:   3'- -CGUCGc-GGGCG---CgCGUUCGcaa--GUCG- -5'
27634 3' -58.4 NC_005882.1 + 1615 0.66 0.395947
Target:  5'- cGCGGCgacGCCCGaUGCGaUggGCGUcgacccgugCGGCg -3'
miRNA:   3'- -CGUCG---CGGGC-GCGC-GuuCGCAa--------GUCG- -5'
27634 3' -58.4 NC_005882.1 + 33086 0.66 0.395947
Target:  5'- cGCGGCGauaUGCuGCGCAAGCccggUCuGCg -3'
miRNA:   3'- -CGUCGCgg-GCG-CGCGUUCGca--AGuCG- -5'
27634 3' -58.4 NC_005882.1 + 12448 0.67 0.3868
Target:  5'- -aAGCGgCCGCGUGCcGGC---CGGCg -3'
miRNA:   3'- cgUCGCgGGCGCGCGuUCGcaaGUCG- -5'
27634 3' -58.4 NC_005882.1 + 19204 0.67 0.3868
Target:  5'- cGCAGcCGCCgGCccucaagggccuGCGCGA-CGUcaauuUCAGCg -3'
miRNA:   3'- -CGUC-GCGGgCG------------CGCGUUcGCA-----AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 9950 0.67 0.378687
Target:  5'- gGCucGCGCCgGUGC-CAAGCGggucaaaugguucgCAGCg -3'
miRNA:   3'- -CGu-CGCGGgCGCGcGUUCGCaa------------GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.