miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 31027 0.66 0.735152
Target:  5'- uGCGG--CGU-GGCGCgGUCGAUCGGCa -3'
miRNA:   3'- -CGUCaaGCAgCUGCG-CGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 18624 0.66 0.735152
Target:  5'- cGCuaaccUGUCGACGaGCCGAUCGcGCUc -3'
miRNA:   3'- -CGucaa-GCAGCUGCgCGGCUAGC-UGG- -5'
27675 3' -54.1 NC_005882.1 + 11988 0.66 0.735152
Target:  5'- cGCGGccaCGggcgCGGCgGCGCCGAgcaacgCGACg -3'
miRNA:   3'- -CGUCaa-GCa---GCUG-CGCGGCUa-----GCUGg -5'
27675 3' -54.1 NC_005882.1 + 15274 0.66 0.735152
Target:  5'- aGCGGg-CGUCGACcgggaGCGCCGugagcagCgGGCCg -3'
miRNA:   3'- -CGUCaaGCAGCUG-----CGCGGCua-----G-CUGG- -5'
27675 3' -54.1 NC_005882.1 + 17867 0.66 0.735152
Target:  5'- gGCAucaagGUCGAgGCgGCCGG-CGACCg -3'
miRNA:   3'- -CGUcaag-CAGCUgCG-CGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 31461 0.66 0.728716
Target:  5'- cGCAGcgUCGUCuucgcgGGCuGCGCCGGcagccgcgucacgcCGACCa -3'
miRNA:   3'- -CGUCa-AGCAG------CUG-CGCGGCUa-------------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25733 0.66 0.724405
Target:  5'- gGCGGccUGcCGAacaGCGCCGAUuacgggcgCGGCCg -3'
miRNA:   3'- -CGUCaaGCaGCUg--CGCGGCUA--------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25694 0.66 0.724405
Target:  5'- gGCAGccgcCGUCGcguAUGUGCCGAgcaugUCGGCg -3'
miRNA:   3'- -CGUCaa--GCAGC---UGCGCGGCU-----AGCUGg -5'
27675 3' -54.1 NC_005882.1 + 31958 0.66 0.724405
Target:  5'- gGCAGccccgUGUCGACGaGCgGGUaGACCu -3'
miRNA:   3'- -CGUCaa---GCAGCUGCgCGgCUAgCUGG- -5'
27675 3' -54.1 NC_005882.1 + 22031 0.66 0.724405
Target:  5'- gGCGGUgccaUCGACGUGCuCGAucacguUCGcACCg -3'
miRNA:   3'- -CGUCAagc-AGCUGCGCG-GCU------AGC-UGG- -5'
27675 3' -54.1 NC_005882.1 + 30352 0.66 0.723325
Target:  5'- cGguGUgauUC-UCGGCGCcaucuacuccgauGCCGAUCGcCCg -3'
miRNA:   3'- -CguCA---AGcAGCUGCG-------------CGGCUAGCuGG- -5'
27675 3' -54.1 NC_005882.1 + 16677 0.66 0.722244
Target:  5'- aGCAGgcgcucguagaCGUCGGCGCuaCCGGUCuuGCCg -3'
miRNA:   3'- -CGUCaa---------GCAGCUGCGc-GGCUAGc-UGG- -5'
27675 3' -54.1 NC_005882.1 + 21664 0.66 0.713564
Target:  5'- cGguGUcCGggagcgCGGCGCcuuCCGGUCGACg -3'
miRNA:   3'- -CguCAaGCa-----GCUGCGc--GGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 23267 0.66 0.713564
Target:  5'- cGCcuGcgCGagCGuCGUGCCGAUCGGCg -3'
miRNA:   3'- -CGu-CaaGCa-GCuGCGCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 16699 0.66 0.713564
Target:  5'- gGCGa--CGUCGACGCGCgCGuccgcgcaGGCCg -3'
miRNA:   3'- -CGUcaaGCAGCUGCGCG-GCuag-----CUGG- -5'
27675 3' -54.1 NC_005882.1 + 351 0.66 0.702639
Target:  5'- cGCAGc-CGUCGAUGUaauGCCGcagaAUCGGuCCg -3'
miRNA:   3'- -CGUCaaGCAGCUGCG---CGGC----UAGCU-GG- -5'
27675 3' -54.1 NC_005882.1 + 29171 0.66 0.700445
Target:  5'- uCGGcuaCGcCGGCGCGCCGuugcucgcgugCGGCCg -3'
miRNA:   3'- cGUCaa-GCaGCUGCGCGGCua---------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 19090 0.66 0.691643
Target:  5'- uGCAGgUUGcCGGcCGaCGCCGAgagagaagCGACCc -3'
miRNA:   3'- -CGUCaAGCaGCU-GC-GCGGCUa-------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 8055 0.66 0.691643
Target:  5'- cGCGGcaaCGUCGA-GCGCCauguacagcccGAacUCGACCu -3'
miRNA:   3'- -CGUCaa-GCAGCUgCGCGG-----------CU--AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 15732 0.66 0.691643
Target:  5'- gGCGGcgUCGcCGugGCGCUugccGUCGuCCu -3'
miRNA:   3'- -CGUCa-AGCaGCugCGCGGc---UAGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.