miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27687 3' -55.4 NC_005882.1 + 12070 0.66 0.622341
Target:  5'- uGGCgcgcggACGCCGucaGCGuCGUUGgUGCg -3'
miRNA:   3'- gCUGa-----UGCGGCuugUGC-GCGACgACG- -5'
27687 3' -55.4 NC_005882.1 + 11148 0.66 0.622341
Target:  5'- uCGAUUuucagGAGCACGCGCUGC-GCu -3'
miRNA:   3'- -GCUGAugcggCUUGUGCGCGACGaCG- -5'
27687 3' -55.4 NC_005882.1 + 22192 0.66 0.622341
Target:  5'- aGACgcggaGCCGAACgACGgacCGCUGUUGa -3'
miRNA:   3'- gCUGaug--CGGCUUG-UGC---GCGACGACg -5'
27687 3' -55.4 NC_005882.1 + 20803 0.66 0.622341
Target:  5'- aCGGCgUACGCUG--UugGcCGCcgGCUGCa -3'
miRNA:   3'- -GCUG-AUGCGGCuuGugC-GCGa-CGACG- -5'
27687 3' -55.4 NC_005882.1 + 13483 0.66 0.622341
Target:  5'- -cGCUGCGCUGGuaucugauuCugGCGCUGUacaacGCg -3'
miRNA:   3'- gcUGAUGCGGCUu--------GugCGCGACGa----CG- -5'
27687 3' -55.4 NC_005882.1 + 26819 0.66 0.622341
Target:  5'- gCGACcuucAUGCCGAuCACG-GCcGUUGCg -3'
miRNA:   3'- -GCUGa---UGCGGCUuGUGCgCGaCGACG- -5'
27687 3' -55.4 NC_005882.1 + 3940 0.66 0.611066
Target:  5'- uGAUcgACGaaGcGCACGCGCUGCcgaucGCg -3'
miRNA:   3'- gCUGa-UGCggCuUGUGCGCGACGa----CG- -5'
27687 3' -55.4 NC_005882.1 + 3617 0.66 0.611066
Target:  5'- gCGAUcgUGCCGAAacggUGuCGCUGCUGUa -3'
miRNA:   3'- -GCUGauGCGGCUUgu--GC-GCGACGACG- -5'
27687 3' -55.4 NC_005882.1 + 24847 0.66 0.588583
Target:  5'- gCGAUcagcCGCCGAgcaaggaaacGCAgGCGCUggacucggcGCUGCg -3'
miRNA:   3'- -GCUGau--GCGGCU----------UGUgCGCGA---------CGACG- -5'
27687 3' -55.4 NC_005882.1 + 5552 0.66 0.588583
Target:  5'- uCGACga-GCUGAACGCGCuuGCgaaacGCUGg -3'
miRNA:   3'- -GCUGaugCGGCUUGUGCG--CGa----CGACg -5'
27687 3' -55.4 NC_005882.1 + 27087 0.66 0.577395
Target:  5'- gCGGCUGCucGCCcaGGGCGgGaUGCUGCUGg -3'
miRNA:   3'- -GCUGAUG--CGG--CUUGUgC-GCGACGACg -5'
27687 3' -55.4 NC_005882.1 + 7262 0.66 0.577395
Target:  5'- gCGACauUGCGgCGAACAUGCGUcGUagUGUg -3'
miRNA:   3'- -GCUG--AUGCgGCUUGUGCGCGaCG--ACG- -5'
27687 3' -55.4 NC_005882.1 + 15136 0.66 0.566254
Target:  5'- cCGACaUGCGCgacuCGAucaGCGCGCGCgacaGCcaUGCg -3'
miRNA:   3'- -GCUG-AUGCG----GCU---UGUGCGCGa---CG--ACG- -5'
27687 3' -55.4 NC_005882.1 + 21216 0.66 0.566254
Target:  5'- gGAUgACGCCGAGCAgguugaccgGCGCuUGCUcGCc -3'
miRNA:   3'- gCUGaUGCGGCUUGUg--------CGCG-ACGA-CG- -5'
27687 3' -55.4 NC_005882.1 + 25724 0.66 0.566254
Target:  5'- cCGAacaGCGCCGAuuACGgGCGCgGCcgugGCa -3'
miRNA:   3'- -GCUga-UGCGGCU--UGUgCGCGaCGa---CG- -5'
27687 3' -55.4 NC_005882.1 + 32729 0.66 0.566254
Target:  5'- gCGGCguUGCUGcGCACGaCGUUgGCUGCg -3'
miRNA:   3'- -GCUGauGCGGCuUGUGC-GCGA-CGACG- -5'
27687 3' -55.4 NC_005882.1 + 16044 0.66 0.566254
Target:  5'- cCGACgUGCG-CGucCGCGCGCaGCUcGCg -3'
miRNA:   3'- -GCUG-AUGCgGCuuGUGCGCGaCGA-CG- -5'
27687 3' -55.4 NC_005882.1 + 11975 0.66 0.566254
Target:  5'- gCGGCgGCGCCGAGCaACGCGaCgacaaagGCg -3'
miRNA:   3'- -GCUGaUGCGGCUUG-UGCGC-Gacga---CG- -5'
27687 3' -55.4 NC_005882.1 + 14950 0.66 0.566254
Target:  5'- gGACUGCGUCGGcgaACGUGaUGCgaUGCa -3'
miRNA:   3'- gCUGAUGCGGCUug-UGCGCgACG--ACG- -5'
27687 3' -55.4 NC_005882.1 + 23230 0.67 0.55517
Target:  5'- -cGCUG-GCCGGGCGCGgGCcgGCggGCa -3'
miRNA:   3'- gcUGAUgCGGCUUGUGCgCGa-CGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.